Gene loci information

Transcript annotation

  • This transcript has been annotated as Sestrin-2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7476 g7476.t1 isoform g7476.t1 23919275 23927769
chr_2 g7476 g7476.t1 exon g7476.t1.exon1 23919275 23919340
chr_2 g7476 g7476.t1 cds g7476.t1.CDS1 23919275 23919340
chr_2 g7476 g7476.t1 exon g7476.t1.exon2 23926366 23926850
chr_2 g7476 g7476.t1 cds g7476.t1.CDS2 23926366 23926850
chr_2 g7476 g7476.t1 exon g7476.t1.exon3 23927093 23927135
chr_2 g7476 g7476.t1 cds g7476.t1.CDS3 23927093 23927135
chr_2 g7476 g7476.t1 exon g7476.t1.exon4 23927209 23927769
chr_2 g7476 g7476.t1 cds g7476.t1.CDS4 23927209 23927769
chr_2 g7476 g7476.t1 TTS g7476.t1 23928223 23928223
chr_2 g7476 g7476.t1 TSS g7476.t1 NA NA

Sequences

>g7476.t1 Gene=g7476 Length=1155
ATGCAGACCGTCGATGTCGATATGGATTCAATGGTTGAATATGACGCTGAATATGAACAC
GATAATTATAACTTTAGTGGAAAAAATTGGATAATGGAAAATGTTGACGTTTATGATCAT
GTCACAAAAGTAATTCGTTATCATCCGAAATACTTTGAACATTACATCAAGACACACAGA
TATTTGATGTATGATGATGGACCATTGCCATTCACAACAACACGTCATTATTTGGCCATA
ATTGCAGCAGCTCGCAACAAATGCAACTATCTCGTGAGTCTGCATGAAAAAGAGTTCTTG
GCTGAAGGAGGTGATACAAAATGGCTAAATGGACTCGAATTTATTCCACAAAAGTTGCGT
GCCATTTACGACATCAATAAAATTCTTGCTCATCGTCCATGGCTCTTAACCAAAGAACAC
ATTGAGCGTTTGACGAAGGGCACAAATAGTTGGTCTTTGGCAGAAGTTGTTCATGCAATC
GTCATTCTGGCACACTTTCATTCACTCTCATCTTTCGTATTCATGTGGTCTCAATCAGGA
ATTGGATGCTATGAAACTGAGCTGAGTAATCGTTTTAAAAATGTTGAGCTTCAGGCTGCA
CAATTGACAAAATCAACAGAATCATTGAATACAGTTGAAGTTCCTCAATCGATAAGTCAT
TATGTAGAAGATCCAACTTATGCATATCAAGATTTTGCTAGACGTGGAGCTGAGAATATT
CCACATACTTTTCGAATCCAAGATTATTCTTGGGATGACCATGGATATTCACTTGTCAAT
CGTCTTTATAATGACGTTGGATTTCTGCTTGATGATAAATTCCGTGTCGCTTACAACTTA
ACTTATAAGACACTCGCTGGTCGTCAAAATGTCGACACATCGAAATTTCGTCGTGCAATA
TGGAATTATATTCAGTGCATCTATGGAATCAGACATGATGATTATGACTATGGCGAAGTT
AATAAGCTTTTAGACCGTCCGTTAAAGACATTCATCAAAACAGCTTGTTGCTTCCCAGAG
CGAATAACAAAGCAAGATTATGATAGCATTCTTGTGGAATTACTTGACAGTGAAAAAGTT
CACGTTAATTTGATGATTCTGGAGGCAAAAAATCAAGCGATGCTGTTGTACGCACTTCGC
GAACTCAATAGATAA

>g7476.t1 Gene=g7476 Length=384
MQTVDVDMDSMVEYDAEYEHDNYNFSGKNWIMENVDVYDHVTKVIRYHPKYFEHYIKTHR
YLMYDDGPLPFTTTRHYLAIIAAARNKCNYLVSLHEKEFLAEGGDTKWLNGLEFIPQKLR
AIYDINKILAHRPWLLTKEHIERLTKGTNSWSLAEVVHAIVILAHFHSLSSFVFMWSQSG
IGCYETELSNRFKNVELQAAQLTKSTESLNTVEVPQSISHYVEDPTYAYQDFARRGAENI
PHTFRIQDYSWDDHGYSLVNRLYNDVGFLLDDKFRVAYNLTYKTLAGRQNVDTSKFRRAI
WNYIQCIYGIRHDDYDYGEVNKLLDRPLKTFIKTACCFPERITKQDYDSILVELLDSEKV
HVNLMILEAKNQAMLLYALRELNR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g7476.t1 Gene3D G3DSA:1.20.1290.10 - 32 176 0
4 g7476.t1 PANTHER PTHR12474 P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN 37 174 0
3 g7476.t1 PANTHER PTHR12474 P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN 183 382 0
1 g7476.t1 Pfam PF04636 PA26 p53-induced protein (sestrin) 36 175 0
2 g7476.t1 Pfam PF04636 PA26 p53-induced protein (sestrin) 183 383 0
5 g7476.t1 SUPERFAMILY SSF69118 AhpD-like 32 174 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:1901031 regulation of response to reactive oxygen species BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values