Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7486 g7486.t4 TSS g7486.t4 23974796 23974796
chr_2 g7486 g7486.t4 isoform g7486.t4 23974806 23975732
chr_2 g7486 g7486.t4 exon g7486.t4.exon1 23974806 23975083
chr_2 g7486 g7486.t4 cds g7486.t4.CDS1 23974806 23975083
chr_2 g7486 g7486.t4 exon g7486.t4.exon2 23975140 23975732
chr_2 g7486 g7486.t4 cds g7486.t4.CDS2 23975140 23975731
chr_2 g7486 g7486.t4 TTS g7486.t4 NA NA

Sequences

>g7486.t4 Gene=g7486 Length=871
ATGAGACCGAAACGAGAAGCAGCAAGAAAATCACAATTGCGACTGAAAGAAAAAAAAATT
GATTTGCAACTTTCAGAAGATGAAGAAGAGAATATTGACAGTGAAGATGATTTTTCTGAT
GGGTCTTCTGATGATTATAAACCAAATGAGTCTGCAGACAAAGATGAAGAGTCAGCTCAT
GAGTCTGAAGAAGAGCCAATGAGCGAAGATGAAGATGATAGTGCTGATGAAGAAGATGAG
CAAGATAGCTTTGCTACAAATATTAAAGAAATAAACAAGAAAAAAGGTAGTAAAGTTGCA
AGTTTGAAAAAAGACGCAATCAACAAGTTTAAAAGAAAGCAGAGCAGTTTACATAAAAAT
AATTTGAGTCTTAAATTAAAAGATGTTTTAAAGAAAGCCGAATATACTAGGGGAAAACAA
AAGAGTTTATTCAGTCAATCAGATGATGATAATGAGAGAGAAAAGTCTCCAATATTTGAT
TGCTCAGGCGGTGTTAATTTATCTGATTCGTCGAGCGAATCTGATGACGATGGATCACAA
AAAATTCAAAAAAAAGATTCAACTAAAAACAAACCTAATTTGCTTAACAGTATTAATGAA
TCATCAGATACAGAGGAGGTAGATTTAAATTCCATTCATATTAAGTTAAAAGAAATTGAA
AATGCAAAAGAAAAACTTTCAAATTATAAGCATCCAAAGAAAATCATTACTTCAACCCAA
AGTCAAAAAGAAAATATAGATATAGCAGATTTGTTAGCAATGGGAGAAAATGAAACATCA
GTGAAACGTACAAAGTCAAATGATTCACAAAAGCGAGCAAAACCTACTCAAGGTGATGAT
TCAGATTCTGATAACTGGGAGGATGTTGAAG

>g7486.t4 Gene=g7486 Length=290
MRPKREAARKSQLRLKEKKIDLQLSEDEEENIDSEDDFSDGSSDDYKPNESADKDEESAH
ESEEEPMSEDEDDSADEEDEQDSFATNIKEINKKKGSKVASLKKDAINKFKRKQSSLHKN
NLSLKLKDVLKKAEYTRGKQKSLFSQSDDDNEREKSPIFDCSGGVNLSDSSSESDDDGSQ
KIQKKDSTKNKPNLLNSINESSDTEEVDLNSIHIKLKEIENAKEKLSNYKHPKKIITSTQ
SQKENIDIADLLAMGENETSVKRTKSNDSQKRAKPTQGDDSDSDNWEDVE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 1 25 -
12 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 1 102 -
3 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 26 40 -
9 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 41 56 -
1 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 57 81 -
5 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 82 102 -
8 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 137 157 -
10 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 137 206 -
6 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 174 188 -
2 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 189 205 -
4 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 253 290 -
7 g7486.t4 MobiDBLite mobidb-lite consensus disorder prediction 261 281 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed