Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7486 g7486.t5 TSS g7486.t5 23974796 23974796
chr_2 g7486 g7486.t5 isoform g7486.t5 23974806 23976165
chr_2 g7486 g7486.t5 exon g7486.t5.exon1 23974806 23975054
chr_2 g7486 g7486.t5 cds g7486.t5.CDS1 23975014 23975054
chr_2 g7486 g7486.t5 exon g7486.t5.exon2 23975140 23975732
chr_2 g7486 g7486.t5 cds g7486.t5.CDS2 23975140 23975732
chr_2 g7486 g7486.t5 exon g7486.t5.exon3 23975879 23976165
chr_2 g7486 g7486.t5 cds g7486.t5.CDS3 23975879 23976165
chr_2 g7486 g7486.t5 TTS g7486.t5 NA NA

Sequences

>g7486.t5 Gene=g7486 Length=1129
ATGAGACCGAAACGAGAAGCAGCAAGAAAATCACAATTGCGACTGAAAGAAAAAAAAATT
GATTTGCAACTTTCAGAAGATGAAGAAGAGAATATTGACAGTGAAGATGATTTTTCTGAT
GGGTCTTCTGATGATTATAAACCAAATGAGTCTGCAGACAAAGATGAAGAGTCAGCTCAT
GAGTCTGAAGAAGAGCCAATGAGCGAAGATGAAGATGATAGTGCTGATGAAGAAGATGAG
CAAGATAGCGAAAAAAGGTAGTAAAGTTGCAAGTTTGAAAAAAGACGCAATCAACAAGTT
TAAAAGAAAGCAGAGCAGTTTACATAAAAATAATTTGAGTCTTAAATTAAAAGATGTTTT
AAAGAAAGCCGAATATACTAGGGGAAAACAAAAGAGTTTATTCAGTCAATCAGATGATGA
TAATGAGAGAGAAAAGTCTCCAATATTTGATTGCTCAGGCGGTGTTAATTTATCTGATTC
GTCGAGCGAATCTGATGACGATGGATCACAAAAAATTCAAAAAAAAGATTCAACTAAAAA
CAAACCTAATTTGCTTAACAGTATTAATGAATCATCAGATACAGAGGAGGTAGATTTAAA
TTCCATTCATATTAAGTTAAAAGAAATTGAAAATGCAAAAGAAAAACTTTCAAATTATAA
GCATCCAAAGAAAATCATTACTTCAACCCAAAGTCAAAAAGAAAATATAGATATAGCAGA
TTTGTTAGCAATGGGAGAAAATGAAACATCAGTGAAACGTACAAAGTCAAATGATTCACA
AAAGCGAGCAAAACCTACTCAAGGTGATGATTCAGATTCTGATAACTGGGAGGATGTTGA
AGAAAACGATTCAAGCAGTAAGCAAACACCAAAGGAAAGTGTTGAGATTGTCTTGGATGA
GTTTGGAGATATTCAAAAGAAAAAGTTAGAGAAATTAGTTGATGTTGAAGCACAATTGAA
AAGGAAATTCAACAAGAGACGCAAGGAAATGCAAGAATACCTTCATAAAACTGAACTCAT
ATGTTGGATTTCTCATTACAGTTTTGTAAACAAGCGACTCAACGATATGAATTTAATTAA
TTCTGCTCTTAAAATGCTACCTGAAAACAGTAAGCAATGTTATCCAAAA

>g7486.t5 Gene=g7486 Length=307
MKMIVLMKKMSKIAKKGSKVASLKKDAINKFKRKQSSLHKNNLSLKLKDVLKKAEYTRGK
QKSLFSQSDDDNEREKSPIFDCSGGVNLSDSSSESDDDGSQKIQKKDSTKNKPNLLNSIN
ESSDTEEVDLNSIHIKLKEIENAKEKLSNYKHPKKIITSTQSQKENIDIADLLAMGENET
SVKRTKSNDSQKRAKPTQGDDSDSDNWEDVEENDSSSKQTPKESVEIVLDEFGDIQKKKL
EKLVDVEAQLKRKFNKRRKEMQEYLHKTELICWISHYSFVNKRLNDMNLINSALKMLPEN
SKQCYPK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g7486.t5 MobiDBLite mobidb-lite consensus disorder prediction 61 78 -
4 g7486.t5 MobiDBLite mobidb-lite consensus disorder prediction 61 128 -
2 g7486.t5 MobiDBLite mobidb-lite consensus disorder prediction 95 109 -
5 g7486.t5 MobiDBLite mobidb-lite consensus disorder prediction 110 126 -
6 g7486.t5 MobiDBLite mobidb-lite consensus disorder prediction 179 223 -
1 g7486.t5 MobiDBLite mobidb-lite consensus disorder prediction 182 202 -
7 g7486.t5 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 13 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed