General information for g7516.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Speckle-type POZ protein-like.
Parent gene
- The parent gene g7516 is located on chr_2: 24196972..24198292 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7516 | g7516.t1 | isoform | g7516.t1 | 24196972 | 24198292 |
| chr_2 | g7516 | g7516.t1 | exon | g7516.t1.exon1 | 24196972 | 24196980 |
| chr_2 | g7516 | g7516.t1 | cds | g7516.t1.CDS1 | 24196972 | 24196980 |
| chr_2 | g7516 | g7516.t1 | exon | g7516.t1.exon2 | 24197045 | 24197159 |
| chr_2 | g7516 | g7516.t1 | cds | g7516.t1.CDS2 | 24197045 | 24197159 |
| chr_2 | g7516 | g7516.t1 | exon | g7516.t1.exon3 | 24197223 | 24197683 |
| chr_2 | g7516 | g7516.t1 | cds | g7516.t1.CDS3 | 24197223 | 24197683 |
| chr_2 | g7516 | g7516.t1 | exon | g7516.t1.exon4 | 24197739 | 24198060 |
| chr_2 | g7516 | g7516.t1 | cds | g7516.t1.CDS4 | 24197739 | 24198060 |
| chr_2 | g7516 | g7516.t1 | exon | g7516.t1.exon5 | 24198117 | 24198292 |
| chr_2 | g7516 | g7516.t1 | cds | g7516.t1.CDS5 | 24198117 | 24198292 |
| chr_2 | g7516 | g7516.t1 | TSS | g7516.t1 | NA | NA |
| chr_2 | g7516 | g7516.t1 | TTS | g7516.t1 | NA | NA |
Sequences
>g7516.t1 Gene=g7516 Length=1083
ATGAATAAAGAACGTGCTTGTTTTGAAGATGATATAAAGGAATTTGTTTACGATTTTCAT
ATACATCGTAGAATAATATGGAATATTGAAAATTTTCCAGCGTTTCAAGAAAACACTTCG
GCGATAATTAAAATTTCGAGTGAAATGAATTTTTGTGATCATTATGTCTCTAAATTTAAA
TTTTCGATACAACATTGGCAAGGAAATATTATTATTAAGGAAAAAGTTATCAAAAAAATA
AAAGATAAGTACCGAAAGTTAGATGAACAATGTTGGTGCAATGATTCCGAAAGCTGTTGT
GATTTAAAATGCTTTAAATCTCAATTTTATTATTATTCAATAAATTGTTTCATCAAATCA
AATGATCAACCACTTGAATCTTTATGGAAATTATATAAGAACATGAATTACCAAGAATCA
AATGAAACGGAGAATGGATATTATATTAGAGATCAAGATATAAAGATAATAGATGGAAAA
CTCACGCTTATTTTTGACATTGGATTTGGTAACGAAGTATTCCTAAAAATCAACAGCATT
TCTTATGCAGAATTCATTGATGATGAAAACTATAACGATTTCTCAATCGTTTGCAATGAT
GGCATCACAGTTTACGCGAATCGAATTGTTTTGGCTAAAAGCTCTCCAGTTTTCAAAGCG
ATGTTCCAAACAGATATGAGTGAACGACAAAAGAACGAAATAATTCTTAATGATATTGAT
TCAAAAACAATGAAGGAATTTATCAATTTTGTGTATGGCAAACACATTGAGAATTTTGAT
GATTTAGTTGATTCATTATTATATTGTGCTGAGAAATATTTAGTTTCAAACCTAAAAGAT
ATATGCACAAAATGTTTACATGAAAATTTGGATAAGAATAATGCTTTTGAAACTTTAGCA
AAAGCAGAAACGTACAATTTAGAGCCTTTAATGGATCAATGCATAACATTCATTTTAAAA
TTGTATAATGATATCGAAAATATGAATGAATTCAAAAATTTAAGTCAATCTTTGCAAGAT
CAAATCATTGCTGAGAAGAAAGTTTTCATGGTTGAGCTTACATCATACTATACGTCTAAT
TAG
>g7516.t1 Gene=g7516 Length=360
MNKERACFEDDIKEFVYDFHIHRRIIWNIENFPAFQENTSAIIKISSEMNFCDHYVSKFK
FSIQHWQGNIIIKEKVIKKIKDKYRKLDEQCWCNDSESCCDLKCFKSQFYYYSINCFIKS
NDQPLESLWKLYKNMNYQESNETENGYYIRDQDIKIIDGKLTLIFDIGFGNEVFLKINSI
SYAEFIDDENYNDFSIVCNDGITVYANRIVLAKSSPVFKAMFQTDMSERQKNEIILNDID
SKTMKEFINFVYGKHIENFDDLVDSLLYCAEKYLVSNLKDICTKCLHENLDKNNAFETLA
KAETYNLEPLMDQCITFILKLYNDIENMNEFKNLSQSLQDQIIAEKKVFMVELTSYYTSN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7516.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 191 | 273 | 0.0000000 |
| 8 | g7516.t1 | CDD | cd14733 | BACK | 291 | 344 | 0.0000214 |
| 6 | g7516.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 179 | 319 | 0.0000000 |
| 2 | g7516.t1 | PANTHER | PTHR24412 | KELCH PROTEIN | 184 | 347 | 0.0000000 |
| 3 | g7516.t1 | PANTHER | PTHR24412:SF210 | KELCH-LIKE PROTEIN 18 | 184 | 347 | 0.0000000 |
| 1 | g7516.t1 | Pfam | PF00651 | BTB/POZ domain | 187 | 289 | 0.0000000 |
| 7 | g7516.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 192 | 260 | 16.6520000 |
| 5 | g7516.t1 | SMART | SM00225 | BTB_4 | 192 | 290 | 0.0000000 |
| 4 | g7516.t1 | SUPERFAMILY | SSF54695 | POZ domain | 182 | 288 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K10523 (speckle-type POZ protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed