General information for g7517.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7517 is located on chr_2: 24201389..24203184 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7517 | g7517.t3 | TSS | g7517.t3 | 24201217 | 24201217 |
| chr_2 | g7517 | g7517.t3 | isoform | g7517.t3 | 24201274 | 24201958 |
| chr_2 | g7517 | g7517.t3 | exon | g7517.t3.exon1 | 24201274 | 24201326 |
| chr_2 | g7517 | g7517.t3 | cds | g7517.t3.CDS1 | 24201274 | 24201326 |
| chr_2 | g7517 | g7517.t3 | exon | g7517.t3.exon2 | 24201391 | 24201958 |
| chr_2 | g7517 | g7517.t3 | cds | g7517.t3.CDS2 | 24201391 | 24201958 |
| chr_2 | g7517 | g7517.t3 | TTS | g7517.t3 | NA | NA |
Sequences
>g7517.t3 Gene=g7517 Length=621
ATGAGTAAATCTAGTTTTAAGGAAAACAACTGTAACAAAGCATCAATAGAAGGATACAAA
CGGCTTAAAGTTGACGAAAATATGTCCGAAAATTTTTCAAAATGCATCGATAGTGACGAT
AAGGATAGTAATTTATCTGTTACCATTTATGAAGACGAAAGTGATATAAGTTATGTGCAT
AAATCGGCAAAGACTCGGTTAACAGTGGCTTCAAAGAGATCACCTTTAGTTGCAATTAAC
AAACCATTAAATCAACATAACGTTCTGCAAGAATTCGCCAATAATCAAATTCCATCTTCC
TCAAAAACTCCTCTTAAACATAATGAAACTTTTCATCGCAAAATTTTACAAAAAGAACCA
TCAATTGTCAGTTCATTTGATCTACTCTCTGATGAACTACTTCTTCACATCTTCCAATAT
CTTCCGAAAAAAGCACTCAAACGACTTGCACAAGTGAATTCTAGATTTGCTCGTGTTGTA
GAAGACGAAACGCTATGGATTCGAATTGATCTCGCAAACAGATATATTACAAAATATGCT
TTTAGTCGTCTTCTTCCAAGAGGATTTATAATAATGAGACTGGCTCAAACCAATATTGAA
AGTCCTATTTTTAGCCCTCTT
>g7517.t3 Gene=g7517 Length=207
MSKSSFKENNCNKASIEGYKRLKVDENMSENFSKCIDSDDKDSNLSVTIYEDESDISYVH
KSAKTRLTVASKRSPLVAINKPLNQHNVLQEFANNQIPSSSKTPLKHNETFHRKILQKEP
SIVSSFDLLSDELLLHIFQYLPKKALKRLAQVNSRFARVVEDETLWIRIDLANRYITKYA
FSRLLPRGFIIMRLAQTNIESPIFSPL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7517.t3 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 123 | 207 | 0.000000 |
| 1 | g7517.t3 | Pfam | PF12937 | F-box-like | 131 | 171 | 0.000000 |
| 5 | g7517.t3 | ProSiteProfiles | PS50181 | F-box domain profile. | 123 | 169 | 11.697000 |
| 3 | g7517.t3 | SMART | SM00256 | fbox_2 | 129 | 169 | 0.000018 |
| 2 | g7517.t3 | SUPERFAMILY | SSF81383 | F-box domain | 123 | 198 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
