Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g752 g752.t31 TTS g752.t31 5737124 5737124
chr_3 g752 g752.t31 isoform g752.t31 5737587 5738609
chr_3 g752 g752.t31 exon g752.t31.exon1 5737587 5738286
chr_3 g752 g752.t31 cds g752.t31.CDS1 5737589 5738152
chr_3 g752 g752.t31 exon g752.t31.exon2 5738357 5738493
chr_3 g752 g752.t31 exon g752.t31.exon3 5738563 5738609
chr_3 g752 g752.t31 TSS g752.t31 5738761 5738761

Sequences

>g752.t31 Gene=g752 Length=884
ATGCACGATATTTTATATCATAAATTTAATTTGACTCAGGTATGCAATATGACCATCATG
AGTTTCCTGGTGTTGTGCCTAGAACTTTTCTAGGACCACTTTTGATTTCTCTTGTCATTT
CACCTGTAGTTGCATTATTCAATATACTTAGCATTAATAAGTTTTGGTCTCAATATTTGG
GTATTACGACTGACACTTGCTGCATTTGTATCGCTTGCATTCAATCGATTACGAAGGACA
TTAAACCAAAAGTTTGGAAATGATTTTTCAATTTGGTTCTTAGCTATTCATCTTTCACAA
TTCCATTTCATATTCTACATGAGTAGACCGCTGCCAAATGTTATGACTTTACCATTTGTG
CTACTTGCCGTCGATTCATGGCTTAAAAGAGAACAAAGGGGATTTTTAGTTTTTTCTGGA
ATAGCAATTCTAATTTTTAGATCGGAGCTCGTAATCTTTTTAGGTCTTTTATTAATCTAC
GATCTCTTTTATAAACGAATAACAATACCAGAATTATTAAAACTTGGTGTGCCAATAGGT
GCTATTCTTGTTTTATTAACTGTCATTGTTGATTCAATATTTTGGCAAAAACCATTGTGG
CCAGAAGCTCAAGTTTTCTGGTATAATACTATTCTGAATAAATCATCTGATTGGGGCACA
TCTCCCTTTTTATGGTATTTTTATTCTGCGCTACCTAGAGCTCTCGGTTTATCGCTTTTA
CTTGTTCCTTATGGACTATATGCTGAAGCACGCATACGTGCAATAACTATACCAGCTTTA
TTATTTGTACTCCTTTATTCATTTCTTCCACATAAGGAGCTCAGATTTATCATCTACGTT
TTTCCAATGCTTAATATAGCAAGTGCATGTGCATGTCAACGATT

>g752.t31 Gene=g752 Length=188
MSRPLPNVMTLPFVLLAVDSWLKREQRGFLVFSGIAILIFRSELVIFLGLLLIYDLFYKR
ITIPELLKLGVPIGAILVLLTVIVDSIFWQKPLWPEAQVFWYNTILNKSSDWGTSPFLWY
FYSALPRALGLSLLLVPYGLYAEARIRAITIPALLFVLLYSFLPHKELRFIIYVFPMLNI
ASACACQR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g752.t31 PANTHER PTHR22760:SF1 DOL-P-MAN:MAN(7)GLCNAC(2)-PP-DOL ALPHA-1,6-MANNOSYLTRANSFERASE 1 188 4.5E-74
3 g752.t31 PANTHER PTHR22760 GLYCOSYLTRANSFERASE 1 188 4.5E-74
1 g752.t31 Pfam PF03901 Alg9-like mannosyltransferase family 1 188 2.2E-29
15 g752.t31 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
16 g752.t31 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 7 -
17 g752.t31 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 8 16 -
23 g752.t31 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 20 -
13 g752.t31 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 29 -
20 g752.t31 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 30 54 -
9 g752.t31 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 55 65 -
22 g752.t31 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 66 89 -
12 g752.t31 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 90 116 -
19 g752.t31 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 117 136 -
10 g752.t31 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 137 147 -
21 g752.t31 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 148 164 -
14 g752.t31 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 165 169 -
18 g752.t31 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 170 186 -
11 g752.t31 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 187 188 -
6 g752.t31 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 31 53 -
4 g752.t31 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 66 88 -
7 g752.t31 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 117 139 -
8 g752.t31 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 146 163 -
5 g752.t31 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 168 185 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005788 endoplasmic reticulum lumen CC
GO:0016757 glycosyltransferase activity MF
GO:0052824 NA NA
GO:0006488 dolichol-linked oligosaccharide biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed