Gene loci information

Transcript annotation

  • This transcript has been annotated as Tafazzin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7527 g7527.t1 TTS g7527.t1 24342494 24342494
chr_2 g7527 g7527.t1 isoform g7527.t1 24342789 24344195
chr_2 g7527 g7527.t1 exon g7527.t1.exon1 24342789 24343001
chr_2 g7527 g7527.t1 cds g7527.t1.CDS1 24342789 24343001
chr_2 g7527 g7527.t1 exon g7527.t1.exon2 24343060 24343250
chr_2 g7527 g7527.t1 cds g7527.t1.CDS2 24343060 24343250
chr_2 g7527 g7527.t1 exon g7527.t1.exon3 24343310 24343473
chr_2 g7527 g7527.t1 cds g7527.t1.CDS3 24343310 24343473
chr_2 g7527 g7527.t1 exon g7527.t1.exon4 24343535 24343637
chr_2 g7527 g7527.t1 cds g7527.t1.CDS4 24343535 24343637
chr_2 g7527 g7527.t1 exon g7527.t1.exon5 24343874 24343963
chr_2 g7527 g7527.t1 cds g7527.t1.CDS5 24343874 24343963
chr_2 g7527 g7527.t1 exon g7527.t1.exon6 24344025 24344073
chr_2 g7527 g7527.t1 cds g7527.t1.CDS6 24344025 24344073
chr_2 g7527 g7527.t1 exon g7527.t1.exon7 24344181 24344195
chr_2 g7527 g7527.t1 cds g7527.t1.CDS7 24344181 24344195
chr_2 g7527 g7527.t1 TSS g7527.t1 24344215 24344215

Sequences

>g7527.t1 Gene=g7527 Length=825
ATGGAAAAATTTCAATATCCTGCCGATATGCCTTATGATATAAAATGGATTTATCCAAAA
ATGCAAAAGCCCAACGCTTTTTTTCGTGCTGTGAGTAAAGGAGTTATTGGTGCAGTTGGA
TTGATATCTAAAATTATCGTAGGTAATGGTAAAGTTCTGTTGAATAAAACAAGCATTTAC
AATATAGAAGTGTTAGAAAATATCGTGGAGAACAGGCCAAAGAACCAACCTCTTCTTACA
TATAGCAATCATTATTCTTGTGGCGATGACCCTGGCATATTTGGATGTCTTAAATTGAGG
AATGTTTGCAGTCCTAGTCGAATTCGATGGTCTGTTGCTGCACATGATATATGTTTTACT
AATTTTTGGCATTCGTCATTTTTTATGTATGGCAAATGCATACCTGTGATTCGTGGTGGA
GGGATTTATCAACCAGCAATTGATATGTGCATTGAAAAATTAAAATTAGGTGAATGGGTT
CATATTTTTCCTGAAGGCAAAGTCAATATGGAAAAAGAATATATGCGATTAAAATGGGGA
ATTGGGAGAATTCTTAAAGAGCTTTATCCAATTCAACCAATCATTATTCCAATTTATCAT
ATCGGAATGGATAATCTTCTTCCAAATTATCCTCCATACTACTTCCGCTTTAATAATAAG
TTAACTTTTAATTTTGGAAATCCAATTGATATAAGCGATGTGATGAAAAATATTTCTGAT
AATAATGTTGATGATATCACGGCTAGAAAAATGATAACTGATAAATTGCAAGAACAACTT
AATATTATAAGAGTAGAAACTGAAAAACTTCACAATAATTCGTAG

>g7527.t1 Gene=g7527 Length=274
MEKFQYPADMPYDIKWIYPKMQKPNAFFRAVSKGVIGAVGLISKIIVGNGKVLLNKTSIY
NIEVLENIVENRPKNQPLLTYSNHYSCGDDPGIFGCLKLRNVCSPSRIRWSVAAHDICFT
NFWHSSFFMYGKCIPVIRGGGIYQPAIDMCIEKLKLGEWVHIFPEGKVNMEKEYMRLKWG
IGRILKELYPIQPIIIPIYHIGMDNLLPNYPPYYFRFNNKLTFNFGNPIDISDVMKNISD
NNVDDITARKMITDKLQEQLNIIRVETEKLHNNS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g7527.t1 CDD cd07989 LPLAT_AGPAT-like 51 260 0
2 g7527.t1 PANTHER PTHR12497 TAZ PROTEIN TAFAZZIN 11 272 0
7 g7527.t1 PRINTS PR00979 Tafazzin signature 78 97 0
4 g7527.t1 PRINTS PR00979 Tafazzin signature 109 120 0
8 g7527.t1 PRINTS PR00979 Tafazzin signature 123 138 0
3 g7527.t1 PRINTS PR00979 Tafazzin signature 155 169 0
5 g7527.t1 PRINTS PR00979 Tafazzin signature 177 198 0
6 g7527.t1 PRINTS PR00979 Tafazzin signature 216 229 0
1 g7527.t1 Pfam PF01553 Acyltransferase 69 199 0
10 g7527.t1 SMART SM00563 plsc_2 78 203 0
9 g7527.t1 SUPERFAMILY SSF69593 Glycerol-3-phosphate (1)-acyltransferase 44 258 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values