General information for g7527.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Tafazzin-like protein.
Parent gene
- The parent gene g7527 is located on chr_2: 24342789..24344195 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7527 | g7527.t10 | TTS | g7527.t10 | 24342494 | 24342494 |
| chr_2 | g7527 | g7527.t10 | isoform | g7527.t10 | 24342789 | 24344195 |
| chr_2 | g7527 | g7527.t10 | exon | g7527.t10.exon1 | 24342789 | 24343001 |
| chr_2 | g7527 | g7527.t10 | cds | g7527.t10.CDS1 | 24342789 | 24343001 |
| chr_2 | g7527 | g7527.t10 | exon | g7527.t10.exon2 | 24343060 | 24343250 |
| chr_2 | g7527 | g7527.t10 | cds | g7527.t10.CDS2 | 24343060 | 24343227 |
| chr_2 | g7527 | g7527.t10 | exon | g7527.t10.exon3 | 24343379 | 24343473 |
| chr_2 | g7527 | g7527.t10 | exon | g7527.t10.exon4 | 24343535 | 24343993 |
| chr_2 | g7527 | g7527.t10 | exon | g7527.t10.exon5 | 24344181 | 24344195 |
| chr_2 | g7527 | g7527.t10 | TSS | g7527.t10 | 24344215 | 24344215 |
Sequences
>g7527.t10 Gene=g7527 Length=973
ATGGAAAAATTTCAAAATAATGAGAAAAATATTAATTGTCAACAGAAAAGCCCAACGCTT
TTTTTCGTGCTGTGAGTAAAGGAGTTATTGGTGCAGTTGGATTGATATCTAAAATTATCG
TAGGTAATGGTAAAGGTATTGTAAAAAGTTCCCACTCATCAATTTAGGCTTGTGCTCATT
TACTGTATTAACGTCACTAATTTAACTCGTGCATGAAATCTCATGGTCACTGTGTCCTTC
AAAGAGAGTACAATATCGCCTAATCATCATCCCGCTTATCTGCTATAATGTGATTGAAAT
TCATTTTTACTTTTTTCTTATTGACCTATGCGCCTCTTCTTCTTGTTCTTTCATATTATT
CCCGCTTAAAGTTCTGTTGAATAAAACAAGCATTTACAATATAGAAGTGTTAGAAAATAT
CGTGGAGAACAGGCCAAAGAACCAACCTCTTCTTACATATAGCAATCATTATTCTTGTGG
CGATGACCCTGGCATATTTGGATGTCTTAAATTGAGGAATGTTTGCAGTCCTAGTCGAAT
TCGATGGTCTGTTGCTGCACATGATATATGGATTTATCAACCAGCAATTGATATGTGCAT
TGAAAAATTAAAATTAGGTGAATGGGTTCATATTTTTCCTGAAGGCAAAGTCAATATGGA
AAAAGAATATATGCGATTAAAATGGGGAATTGGGAGAATTCTTAAAGAGCTTTATCCAAT
TCAACCAATCATTATTCCAATTTATCATATCGGAATGGATAATCTTCTTCCAAATTATCC
TCCATACTACTTCCGCTTTAATAATAAGTTAACTTTTAATTTTGGAAATCCAATTGATAT
AAGCGATGTGATGAAAAATATTTCTGATAATAATGTTGATGATATCACGGCTAGAAAAAT
GATAACTGATAAATTGCAAGAACAACTTAATATTATAAGAGTAGAAACTGAAAAACTTCA
CAATAATTCGTAG
>g7527.t10 Gene=g7527 Length=126
MCIEKLKLGEWVHIFPEGKVNMEKEYMRLKWGIGRILKELYPIQPIIIPIYHIGMDNLLP
NYPPYYFRFNNKLTFNFGNPIDISDVMKNISDNNVDDITARKMITDKLQEQLNIIRVETE
KLHNNS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7527.t10 | PANTHER | PTHR12497 | TAZ PROTEIN TAFAZZIN | 1 | 124 | 0 |
| 3 | g7527.t10 | PANTHER | PTHR12497:SF0 | TAFAZZIN | 1 | 124 | 0 |
| 5 | g7527.t10 | PRINTS | PR00979 | Tafazzin signature | 7 | 21 | 0 |
| 6 | g7527.t10 | PRINTS | PR00979 | Tafazzin signature | 29 | 50 | 0 |
| 4 | g7527.t10 | PRINTS | PR00979 | Tafazzin signature | 68 | 81 | 0 |
| 1 | g7527.t10 | Pfam | PF01553 | Acyltransferase | 3 | 51 | 0 |
| 7 | g7527.t10 | SUPERFAMILY | SSF69593 | Glycerol-3-phosphate (1)-acyltransferase | 3 | 112 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
| GO:0006644 | phospholipid metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
