Gene loci information

Transcript annotation

  • This transcript has been annotated as Tafazzin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7527 g7527.t14 TTS g7527.t14 24342494 24342494
chr_2 g7527 g7527.t14 isoform g7527.t14 24342789 24344195
chr_2 g7527 g7527.t14 exon g7527.t14.exon1 24342789 24343250
chr_2 g7527 g7527.t14 cds g7527.t14.CDS1 24343033 24343250
chr_2 g7527 g7527.t14 exon g7527.t14.exon2 24343310 24343473
chr_2 g7527 g7527.t14 cds g7527.t14.CDS2 24343310 24343473
chr_2 g7527 g7527.t14 exon g7527.t14.exon3 24343535 24343637
chr_2 g7527 g7527.t14 cds g7527.t14.CDS3 24343535 24343637
chr_2 g7527 g7527.t14 exon g7527.t14.exon4 24343874 24343963
chr_2 g7527 g7527.t14 cds g7527.t14.CDS4 24343874 24343963
chr_2 g7527 g7527.t14 exon g7527.t14.exon5 24344025 24344073
chr_2 g7527 g7527.t14 cds g7527.t14.CDS5 24344025 24344073
chr_2 g7527 g7527.t14 exon g7527.t14.exon6 24344181 24344195
chr_2 g7527 g7527.t14 cds g7527.t14.CDS6 24344181 24344195
chr_2 g7527 g7527.t14 TSS g7527.t14 24344215 24344215

Sequences

>g7527.t14 Gene=g7527 Length=883
ATGGAAAAATTTCAATATCCTGCCGATATGCCTTATGATATAAAATGGATTTATCCAAAA
ATGCAAAAGCCCAACGCTTTTTTTCGTGCTGTGAGTAAAGGAGTTATTGGTGCAGTTGGA
TTGATATCTAAAATTATCGTAGGTAATGGTAAAGTTCTGTTGAATAAAACAAGCATTTAC
AATATAGAAGTGTTAGAAAATATCGTGGAGAACAGGCCAAAGAACCAACCTCTTCTTACA
TATAGCAATCATTATTCTTGTGGCGATGACCCTGGCATATTTGGATGTCTTAAATTGAGG
AATGTTTGCAGTCCTAGTCGAATTCGATGGTCTGTTGCTGCACATGATATATGTTTTACT
AATTTTTGGCATTCGTCATTTTTTATGTATGGCAAATGCATACCTGTGATTCGTGGTGGA
GGGATTTATCAACCAGCAATTGATATGTGCATTGAAAAATTAAAATTAGGTGAATGGGTT
CATATTTTTCCTGAAGGCAAAGTCAATATGGAAAAAGAATATATGCGATTAAAATGGGGA
ATTGGGAGAATTCTTAAAGAGCTTTATCCAATTCAACCAATCATTATTCCAATTTATCAT
ATCGGAATGGATGTGAGTTTAACGTCTTTAAATTTATGACTTAATGAGATACTTTTTTAA
TATATTTTAGAATCTTCTTCCAAATTATCCTCCATACTACTTCCGCTTTAATAATAAGTT
AACTTTTAATTTTGGAAATCCAATTGATATAAGCGATGTGATGAAAAATATTTCTGATAA
TAATGTTGATGATATCACGGCTAGAAAAATGATAACTGATAAATTGCAAGAACAACTTAA
TATTATAAGAGTAGAAACTGAAAAACTTCACAATAATTCGTAG

>g7527.t14 Gene=g7527 Length=212
MEKFQYPADMPYDIKWIYPKMQKPNAFFRAVSKGVIGAVGLISKIIVGNGKVLLNKTSIY
NIEVLENIVENRPKNQPLLTYSNHYSCGDDPGIFGCLKLRNVCSPSRIRWSVAAHDICFT
NFWHSSFFMYGKCIPVIRGGGIYQPAIDMCIEKLKLGEWVHIFPEGKVNMEKEYMRLKWG
IGRILKELYPIQPIIIPIYHIGMDVSLTSLNL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g7527.t14 CDD cd07989 LPLAT_AGPAT-like 51 187 0
2 g7527.t14 PANTHER PTHR12497 TAZ PROTEIN TAFAZZIN 11 205 0
6 g7527.t14 PRINTS PR00979 Tafazzin signature 78 97 0
4 g7527.t14 PRINTS PR00979 Tafazzin signature 109 120 0
7 g7527.t14 PRINTS PR00979 Tafazzin signature 123 138 0
3 g7527.t14 PRINTS PR00979 Tafazzin signature 155 169 0
5 g7527.t14 PRINTS PR00979 Tafazzin signature 177 198 0
1 g7527.t14 Pfam PF01553 Acyltransferase 69 199 0
9 g7527.t14 SMART SM00563 plsc_2 78 203 0
8 g7527.t14 SUPERFAMILY SSF69593 Glycerol-3-phosphate (1)-acyltransferase 43 199 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values