Gene loci information

Transcript annotation

  • This transcript has been annotated as Tafazzin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7527 g7527.t2 TTS g7527.t2 24342494 24342494
chr_2 g7527 g7527.t2 isoform g7527.t2 24342789 24344195
chr_2 g7527 g7527.t2 exon g7527.t2.exon1 24342789 24343001
chr_2 g7527 g7527.t2 cds g7527.t2.CDS1 24342789 24343001
chr_2 g7527 g7527.t2 exon g7527.t2.exon2 24343060 24343250
chr_2 g7527 g7527.t2 cds g7527.t2.CDS2 24343060 24343250
chr_2 g7527 g7527.t2 exon g7527.t2.exon3 24343310 24343473
chr_2 g7527 g7527.t2 cds g7527.t2.CDS3 24343310 24343473
chr_2 g7527 g7527.t2 exon g7527.t2.exon4 24343535 24343637
chr_2 g7527 g7527.t2 cds g7527.t2.CDS4 24343535 24343637
chr_2 g7527 g7527.t2 exon g7527.t2.exon5 24343886 24343963
chr_2 g7527 g7527.t2 cds g7527.t2.CDS5 24343886 24343963
chr_2 g7527 g7527.t2 exon g7527.t2.exon6 24344025 24344073
chr_2 g7527 g7527.t2 cds g7527.t2.CDS6 24344025 24344073
chr_2 g7527 g7527.t2 exon g7527.t2.exon7 24344181 24344195
chr_2 g7527 g7527.t2 cds g7527.t2.CDS7 24344181 24344195
chr_2 g7527 g7527.t2 TSS g7527.t2 24344215 24344215

Sequences

>g7527.t2 Gene=g7527 Length=813
ATGGAAAAATTTCAATATCCTGCCGATATGCCTTATGATATAAAATGGATTTATCCAAAA
ATGCAAAAGCCCAACGCTTTTTTTCGTGCTGTGAGTAAAGGAGTTATTGGTGCAGTTGGA
TTGATATCTAAAATTATCGTAGTTCTGTTGAATAAAACAAGCATTTACAATATAGAAGTG
TTAGAAAATATCGTGGAGAACAGGCCAAAGAACCAACCTCTTCTTACATATAGCAATCAT
TATTCTTGTGGCGATGACCCTGGCATATTTGGATGTCTTAAATTGAGGAATGTTTGCAGT
CCTAGTCGAATTCGATGGTCTGTTGCTGCACATGATATATGTTTTACTAATTTTTGGCAT
TCGTCATTTTTTATGTATGGCAAATGCATACCTGTGATTCGTGGTGGAGGGATTTATCAA
CCAGCAATTGATATGTGCATTGAAAAATTAAAATTAGGTGAATGGGTTCATATTTTTCCT
GAAGGCAAAGTCAATATGGAAAAAGAATATATGCGATTAAAATGGGGAATTGGGAGAATT
CTTAAAGAGCTTTATCCAATTCAACCAATCATTATTCCAATTTATCATATCGGAATGGAT
AATCTTCTTCCAAATTATCCTCCATACTACTTCCGCTTTAATAATAAGTTAACTTTTAAT
TTTGGAAATCCAATTGATATAAGCGATGTGATGAAAAATATTTCTGATAATAATGTTGAT
GATATCACGGCTAGAAAAATGATAACTGATAAATTGCAAGAACAACTTAATATTATAAGA
GTAGAAACTGAAAAACTTCACAATAATTCGTAG

>g7527.t2 Gene=g7527 Length=270
MEKFQYPADMPYDIKWIYPKMQKPNAFFRAVSKGVIGAVGLISKIIVVLLNKTSIYNIEV
LENIVENRPKNQPLLTYSNHYSCGDDPGIFGCLKLRNVCSPSRIRWSVAAHDICFTNFWH
SSFFMYGKCIPVIRGGGIYQPAIDMCIEKLKLGEWVHIFPEGKVNMEKEYMRLKWGIGRI
LKELYPIQPIIIPIYHIGMDNLLPNYPPYYFRFNNKLTFNFGNPIDISDVMKNISDNNVD
DITARKMITDKLQEQLNIIRVETEKLHNNS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g7527.t2 CDD cd07989 LPLAT_AGPAT-like 49 256 5.37247E-23
2 g7527.t2 PANTHER PTHR12497 TAZ PROTEIN TAFAZZIN 11 268 4.2E-81
7 g7527.t2 PRINTS PR00979 Tafazzin signature 74 93 7.7E-28
6 g7527.t2 PRINTS PR00979 Tafazzin signature 105 116 7.7E-28
4 g7527.t2 PRINTS PR00979 Tafazzin signature 119 134 7.7E-28
8 g7527.t2 PRINTS PR00979 Tafazzin signature 151 165 7.7E-28
5 g7527.t2 PRINTS PR00979 Tafazzin signature 173 194 7.7E-28
3 g7527.t2 PRINTS PR00979 Tafazzin signature 212 225 7.7E-28
1 g7527.t2 Pfam PF01553 Acyltransferase 65 195 1.3E-24
11 g7527.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 29 -
13 g7527.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 30 50 -
12 g7527.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 51 270 -
10 g7527.t2 SMART SM00563 plsc_2 74 199 1.6E-19
9 g7527.t2 SUPERFAMILY SSF69593 Glycerol-3-phosphate (1)-acyltransferase 45 254 5.62E-18

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values