Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Tafazzin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7527 g7527.t6 TTS g7527.t6 24342494 24342494
chr_2 g7527 g7527.t6 isoform g7527.t6 24342789 24344073
chr_2 g7527 g7527.t6 exon g7527.t6.exon1 24342789 24343001
chr_2 g7527 g7527.t6 cds g7527.t6.CDS1 24342789 24343001
chr_2 g7527 g7527.t6 exon g7527.t6.exon2 24343060 24343250
chr_2 g7527 g7527.t6 cds g7527.t6.CDS2 24343060 24343250
chr_2 g7527 g7527.t6 exon g7527.t6.exon3 24343310 24343473
chr_2 g7527 g7527.t6 cds g7527.t6.CDS3 24343310 24343346
chr_2 g7527 g7527.t6 exon g7527.t6.exon4 24343535 24343963
chr_2 g7527 g7527.t6 exon g7527.t6.exon5 24344025 24344073
chr_2 g7527 g7527.t6 TSS g7527.t6 24344215 24344215

Sequences

>g7527.t6 Gene=g7527 Length=1046
TATCCTGCCGATATGCCTTATGATATAAAATGGATTTATCCAAAAATGCAAAAGCCCAAC
GCTTTTTTTCGTGCTGTGAGTAAAGGAGTTATTGGTGCAGTTGGATTGATATCTAAAATT
ATCGTAGGTAATGGTAAAGGTATTGTAAAAAGTTCCCACTCATCAATTTAGGCTTGTGCT
CATTTACTGTATTAACGTCACTAATTTAACTCGTGCATGAAATCTCATGGTCACTGTGTC
CTTCAAAGAGAGTACAATATCGCCTAATCATCATCCCGCTTATCTGCTATAATGTGATTG
AAATTCATTTTTACTTTTTTCTTATTGACCTATGCGCCTCTTCTTCTTGTTCTTTCATAT
TATTCCCGCTTAAAGTTCTGTTGAATAAAACAAGCATTTACAATATAGAAGTGTTAGAAA
ATATCGTGGAGAACAGGCCAAAGAACCAACCTCTTCTTACATATAGCAATCATTATTCTT
GTGGCGATGACCCTGGCATATTTGGATGTCTTAAATTGAGGAATGTTTGCAGTCCTAGTC
GAATTCGATGGTCTGTTGCTGCACATGATATATGTTTTACTAATTTTTGGCATTCGTCAT
TTTTTATGTATGGCAAATGCATACCTGTGATTCGTGGTGGAGGGATTTATCAACCAGCAA
TTGATATGTGCATTGAAAAATTAAAATTAGGTGAATGGGTTCATATTTTTCCTGAAGGCA
AAGTCAATATGGAAAAAGAATATATGCGATTAAAATGGGGAATTGGGAGAATTCTTAAAG
AGCTTTATCCAATTCAACCAATCATTATTCCAATTTATCATATCGGAATGGATAATCTTC
TTCCAAATTATCCTCCATACTACTTCCGCTTTAATAATAAGTTAACTTTTAATTTTGGAA
ATCCAATTGATATAAGCGATGTGATGAAAAATATTTCTGATAATAATGTTGATGATATCA
CGGCTAGAAAAATGATAACTGATAAATTGCAAGAACAACTTAATATTATAAGAGTAGAAA
CTGAAAAACTTCACAATAATTCGTAG

>g7527.t6 Gene=g7527 Length=146
MYGKCIPVIRGGGIYQPAIDMCIEKLKLGEWVHIFPEGKVNMEKEYMRLKWGIGRILKEL
YPIQPIIIPIYHIGMDNLLPNYPPYYFRFNNKLTFNFGNPIDISDVMKNISDNNVDDITA
RKMITDKLQEQLNIIRVETEKLHNNS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7527.t6 CDD cd07989 LPLAT_AGPAT-like 2 132 0
2 g7527.t6 PANTHER PTHR12497 TAZ PROTEIN TAFAZZIN 2 144 0
4 g7527.t6 PRINTS PR00979 Tafazzin signature 27 41 0
5 g7527.t6 PRINTS PR00979 Tafazzin signature 49 70 0
3 g7527.t6 PRINTS PR00979 Tafazzin signature 88 101 0
1 g7527.t6 Pfam PF01553 Acyltransferase 3 71 0
6 g7527.t6 SUPERFAMILY SSF69593 Glycerol-3-phosphate (1)-acyltransferase 4 132 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values