Gene loci information

Transcript annotation

  • This transcript has been annotated as Tafazzin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7527 g7527.t7 TTS g7527.t7 24342494 24342494
chr_2 g7527 g7527.t7 isoform g7527.t7 24342789 24344195
chr_2 g7527 g7527.t7 exon g7527.t7.exon1 24342789 24343001
chr_2 g7527 g7527.t7 cds g7527.t7.CDS1 24342789 24343001
chr_2 g7527 g7527.t7 exon g7527.t7.exon2 24343060 24343250
chr_2 g7527 g7527.t7 cds g7527.t7.CDS2 24343060 24343250
chr_2 g7527 g7527.t7 exon g7527.t7.exon3 24343310 24343473
chr_2 g7527 g7527.t7 cds g7527.t7.CDS3 24343310 24343473
chr_2 g7527 g7527.t7 exon g7527.t7.exon4 24343535 24343640
chr_2 g7527 g7527.t7 cds g7527.t7.CDS4 24343535 24343640
chr_2 g7527 g7527.t7 exon g7527.t7.exon5 24343874 24343963
chr_2 g7527 g7527.t7 cds g7527.t7.CDS5 24343874 24343963
chr_2 g7527 g7527.t7 exon g7527.t7.exon6 24344025 24344073
chr_2 g7527 g7527.t7 cds g7527.t7.CDS6 24344025 24344073
chr_2 g7527 g7527.t7 exon g7527.t7.exon7 24344181 24344195
chr_2 g7527 g7527.t7 cds g7527.t7.CDS7 24344181 24344195
chr_2 g7527 g7527.t7 TSS g7527.t7 24344215 24344215

Sequences

>g7527.t7 Gene=g7527 Length=828
ATGGAAAAATTTCAATATCCTGCCGATATGCCTTATGATATAAAATGGATTTATCCAAAA
ATGCAAAAGCCCAACGCTTTTTTTCGTGCTGTGAGTAAAGGAGTTATTGGTGCAGTTGGA
TTGATATCTAAAATTATCGTAGGTAATGGTAAAGAAGTTCTGTTGAATAAAACAAGCATT
TACAATATAGAAGTGTTAGAAAATATCGTGGAGAACAGGCCAAAGAACCAACCTCTTCTT
ACATATAGCAATCATTATTCTTGTGGCGATGACCCTGGCATATTTGGATGTCTTAAATTG
AGGAATGTTTGCAGTCCTAGTCGAATTCGATGGTCTGTTGCTGCACATGATATATGTTTT
ACTAATTTTTGGCATTCGTCATTTTTTATGTATGGCAAATGCATACCTGTGATTCGTGGT
GGAGGGATTTATCAACCAGCAATTGATATGTGCATTGAAAAATTAAAATTAGGTGAATGG
GTTCATATTTTTCCTGAAGGCAAAGTCAATATGGAAAAAGAATATATGCGATTAAAATGG
GGAATTGGGAGAATTCTTAAAGAGCTTTATCCAATTCAACCAATCATTATTCCAATTTAT
CATATCGGAATGGATAATCTTCTTCCAAATTATCCTCCATACTACTTCCGCTTTAATAAT
AAGTTAACTTTTAATTTTGGAAATCCAATTGATATAAGCGATGTGATGAAAAATATTTCT
GATAATAATGTTGATGATATCACGGCTAGAAAAATGATAACTGATAAATTGCAAGAACAA
CTTAATATTATAAGAGTAGAAACTGAAAAACTTCACAATAATTCGTAG

>g7527.t7 Gene=g7527 Length=275
MEKFQYPADMPYDIKWIYPKMQKPNAFFRAVSKGVIGAVGLISKIIVGNGKEVLLNKTSI
YNIEVLENIVENRPKNQPLLTYSNHYSCGDDPGIFGCLKLRNVCSPSRIRWSVAAHDICF
TNFWHSSFFMYGKCIPVIRGGGIYQPAIDMCIEKLKLGEWVHIFPEGKVNMEKEYMRLKW
GIGRILKELYPIQPIIIPIYHIGMDNLLPNYPPYYFRFNNKLTFNFGNPIDISDVMKNIS
DNNVDDITARKMITDKLQEQLNIIRVETEKLHNNS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g7527.t7 CDD cd07989 LPLAT_AGPAT-like 54 261 0
2 g7527.t7 PANTHER PTHR12497 TAZ PROTEIN TAFAZZIN 11 273 0
8 g7527.t7 PRINTS PR00979 Tafazzin signature 79 98 0
5 g7527.t7 PRINTS PR00979 Tafazzin signature 110 121 0
7 g7527.t7 PRINTS PR00979 Tafazzin signature 124 139 0
6 g7527.t7 PRINTS PR00979 Tafazzin signature 156 170 0
3 g7527.t7 PRINTS PR00979 Tafazzin signature 178 199 0
4 g7527.t7 PRINTS PR00979 Tafazzin signature 217 230 0
1 g7527.t7 Pfam PF01553 Acyltransferase 70 200 0
10 g7527.t7 SMART SM00563 plsc_2 79 204 0
9 g7527.t7 SUPERFAMILY SSF69593 Glycerol-3-phosphate (1)-acyltransferase 57 259 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed