Gene loci information

Transcript annotation

  • This transcript has been annotated as Tafazzin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7527 g7527.t8 TTS g7527.t8 24342494 24342494
chr_2 g7527 g7527.t8 isoform g7527.t8 24342789 24344195
chr_2 g7527 g7527.t8 exon g7527.t8.exon1 24342789 24343001
chr_2 g7527 g7527.t8 cds g7527.t8.CDS1 24342789 24343001
chr_2 g7527 g7527.t8 exon g7527.t8.exon2 24343060 24343250
chr_2 g7527 g7527.t8 cds g7527.t8.CDS2 24343060 24343250
chr_2 g7527 g7527.t8 exon g7527.t8.exon3 24343310 24343473
chr_2 g7527 g7527.t8 cds g7527.t8.CDS3 24343310 24343473
chr_2 g7527 g7527.t8 exon g7527.t8.exon4 24343535 24343637
chr_2 g7527 g7527.t8 cds g7527.t8.CDS4 24343535 24343637
chr_2 g7527 g7527.t8 exon g7527.t8.exon5 24343886 24343963
chr_2 g7527 g7527.t8 cds g7527.t8.CDS5 24343886 24343963
chr_2 g7527 g7527.t8 exon g7527.t8.exon6 24344025 24344195
chr_2 g7527 g7527.t8 cds g7527.t8.CDS6 24344025 24344061
chr_2 g7527 g7527.t8 TSS g7527.t8 24344215 24344215

Sequences

>g7527.t8 Gene=g7527 Length=920
ATGGAAAAATTTCAAGTGAGTGCCTTTATAATTAAATTAGAATAAAACAGCATTTCATAG
TTGATTCGGAGTGAATTTAATATAGAATAAAAAATTCTCCATTAATTTTTATTTATTCAC
AGTATCCTGCCGATATGCCTTATGATATAAAATGGATTTATCCAAAAATGCAAAAGCCCA
ACGCTTTTTTTCGTGCTGTGAGTAAAGGAGTTATTGGTGCAGTTGGATTGATATCTAAAA
TTATCGTAGTTCTGTTGAATAAAACAAGCATTTACAATATAGAAGTGTTAGAAAATATCG
TGGAGAACAGGCCAAAGAACCAACCTCTTCTTACATATAGCAATCATTATTCTTGTGGCG
ATGACCCTGGCATATTTGGATGTCTTAAATTGAGGAATGTTTGCAGTCCTAGTCGAATTC
GATGGTCTGTTGCTGCACATGATATATGTTTTACTAATTTTTGGCATTCGTCATTTTTTA
TGTATGGCAAATGCATACCTGTGATTCGTGGTGGAGGGATTTATCAACCAGCAATTGATA
TGTGCATTGAAAAATTAAAATTAGGTGAATGGGTTCATATTTTTCCTGAAGGCAAAGTCA
ATATGGAAAAAGAATATATGCGATTAAAATGGGGAATTGGGAGAATTCTTAAAGAGCTTT
ATCCAATTCAACCAATCATTATTCCAATTTATCATATCGGAATGGATAATCTTCTTCCAA
ATTATCCTCCATACTACTTCCGCTTTAATAATAAGTTAACTTTTAATTTTGGAAATCCAA
TTGATATAAGCGATGTGATGAAAAATATTTCTGATAATAATGTTGATGATATCACGGCTA
GAAAAATGATAACTGATAAATTGCAAGAACAACTTAATATTATAAGAGTAGAAACTGAAA
AACTTCACAATAATTCGTAG

>g7527.t8 Gene=g7527 Length=261
MPYDIKWIYPKMQKPNAFFRAVSKGVIGAVGLISKIIVVLLNKTSIYNIEVLENIVENRP
KNQPLLTYSNHYSCGDDPGIFGCLKLRNVCSPSRIRWSVAAHDICFTNFWHSSFFMYGKC
IPVIRGGGIYQPAIDMCIEKLKLGEWVHIFPEGKVNMEKEYMRLKWGIGRILKELYPIQP
IIIPIYHIGMDNLLPNYPPYYFRFNNKLTFNFGNPIDISDVMKNISDNNVDDITARKMIT
DKLQEQLNIIRVETEKLHNNS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7527.t8 CDD cd07989 LPLAT_AGPAT-like 57 247 6.76144E-23
2 g7527.t8 PANTHER PTHR12497 TAZ PROTEIN TAFAZZIN 2 259 3.8E-81
5 g7527.t8 PRINTS PR00979 Tafazzin signature 65 84 6.5E-28
7 g7527.t8 PRINTS PR00979 Tafazzin signature 96 107 6.5E-28
8 g7527.t8 PRINTS PR00979 Tafazzin signature 110 125 6.5E-28
4 g7527.t8 PRINTS PR00979 Tafazzin signature 142 156 6.5E-28
6 g7527.t8 PRINTS PR00979 Tafazzin signature 164 185 6.5E-28
3 g7527.t8 PRINTS PR00979 Tafazzin signature 203 216 6.5E-28
1 g7527.t8 Pfam PF01553 Acyltransferase 56 186 1.1E-24
10 g7527.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 20 -
12 g7527.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 21 41 -
11 g7527.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 42 261 -
15 g7527.t8 SMART SM00563 plsc_2 65 190 1.6E-19
9 g7527.t8 SUPERFAMILY SSF69593 Glycerol-3-phosphate (1)-acyltransferase 36 245 4.32E-18
14 g7527.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 40 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed