General information for g7533.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein transport protein Sec31A.
Parent gene
- The parent gene g7533 is located on chr_2: 24377797..24378620 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7533 | g7533.t5 | isoform | g7533.t5 | 24377797 | 24378620 |
| chr_2 | g7533 | g7533.t5 | exon | g7533.t5.exon1 | 24377797 | 24378237 |
| chr_2 | g7533 | g7533.t5 | cds | g7533.t5.CDS1 | 24377830 | 24378237 |
| chr_2 | g7533 | g7533.t5 | exon | g7533.t5.exon2 | 24378297 | 24378368 |
| chr_2 | g7533 | g7533.t5 | cds | g7533.t5.CDS2 | 24378297 | 24378368 |
| chr_2 | g7533 | g7533.t5 | exon | g7533.t5.exon3 | 24378432 | 24378620 |
| chr_2 | g7533 | g7533.t5 | cds | g7533.t5.CDS3 | 24378432 | 24378620 |
| chr_2 | g7533 | g7533.t5 | TTS | g7533.t5 | 24378856 | 24378856 |
| chr_2 | g7533 | g7533.t5 | TSS | g7533.t5 | NA | NA |
Sequences
>g7533.t5 Gene=g7533 Length=702
CCCAAAAAAGAGATAGCAGCCGTTGCTCCCATTATGCATCCAATTTTCGGAAGTGCAGAT
GTGACACCGGTTCCACAAGTGCCTACTGCAAATAACAATGTCATGACTCCTGGTATGCCT
CTTCAAAATCAATATAATCAAAATTACATGATACCACAGGCTACAGTTAATCCAATGAAT
ATGAATACTGGAAGTTTTTATCCATCGCCGCAGCAGCAACAGCCAGTTCAAGAAGTGCAA
GATCCTAATAACTTGATCAATTATTCAAATTTTAATAATTTTGCTAGTGTTCAAACACAA
ATGCAACCGCAACAATCCCAATCGCCACAACCAAGCGTTCCAGCTGTTCGTGAAAAACCT
CCGCTTCCTGAAGAATATATTTATTTGCAAACTGTATTAGACGAACTTAAGACGCAATGT
ATTAACAGAGCAACAAATCCTCAAATGAAAAGAAAACTTGATGACGTCTCAAAGCGATTG
GAATCACTTTATGATTTATTGCGTGAGAATAGGTTATCTACGAATACACTCGATTCGTTA
AATCAAATGGTGCAATTGATAACTATAGGCGATTATGCTCATTGTTTAGGACTTCATACA
CAAATGGTTTCAGGTCCTGAATTTGCCAAGATAGCAAGTTTTATGCCTGGAATAAAAATT
CTGCTTCAATTGGCTATTCAGTTGCAAGTCTTTTTACGATAA
>g7533.t5 Gene=g7533 Length=222
MHPIFGSADVTPVPQVPTANNNVMTPGMPLQNQYNQNYMIPQATVNPMNMNTGSFYPSPQ
QQQPVQEVQDPNNLINYSNFNNFASVQTQMQPQQSQSPQPSVPAVREKPPLPEEYIYLQT
VLDELKTQCINRATNPQMKRKLDDVSKRLESLYDLLRENRLSTNTLDSLNQMVQLITIGD
YAHCLGLHTQMVSGPEFAKIASFMPGIKILLQLAIQLQVFLR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7533.t5 | Gene3D | G3DSA:1.20.940.10 | Functional domain of the splicing factor Prp18 | 113 | 219 | 1.7E-8 |
| 2 | g7533.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 107 | - |
| 3 | g7533.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 102 | - |
| 1 | g7533.t5 | PANTHER | PTHR13923 | SEC31-RELATED PROTEIN | 17 | 215 | 6.0E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
