General information for g7545.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Arginine-glutamic acid dipeptide repeats protein.
Parent gene
- The parent gene g7545 is located on chr_2: 24455027..24458664 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7545 | g7545.t3 | isoform | g7545.t3 | 24447710 | 24455485 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon1 | 24447710 | 24447769 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS1 | 24447710 | 24447769 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon2 | 24448649 | 24449626 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS2 | 24448649 | 24449626 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon3 | 24449692 | 24452132 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS3 | 24449692 | 24452132 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon4 | 24452353 | 24453072 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS4 | 24452353 | 24453072 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon5 | 24453136 | 24453438 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS5 | 24453136 | 24453438 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon6 | 24453896 | 24453973 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS6 | 24453896 | 24453973 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon7 | 24454202 | 24454328 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS7 | 24454202 | 24454328 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon8 | 24454994 | 24455027 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS8 | 24454994 | 24455027 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon9 | 24455138 | 24455229 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS9 | 24455138 | 24455229 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon10 | 24455292 | 24455359 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS10 | 24455292 | 24455359 |
| chr_2 | g7545 | g7545.t3 | exon | g7545.t3.exon11 | 24455419 | 24455485 |
| chr_2 | g7545 | g7545.t3 | cds | g7545.t3.CDS11 | 24455419 | 24455485 |
| chr_2 | g7545 | g7545.t3 | TSS | g7545.t3 | NA | NA |
| chr_2 | g7545 | g7545.t3 | TTS | g7545.t3 | NA | NA |
Sequences
>g7545.t3 Gene=g7545 Length=4968
ATGGAAACAGCCTCCCCAAGTCCATCAGAGCCAAGAATAAGAGTGGGTCCTCAGCACCAG
GCGCTATTGCCAGATTATAAACCAATTCAATTTTATCGATCCGAAGAAGACGAAGCTAGA
GATCTTGAGGATCCACGATGGCGTCCAAATGTGTTTCTTGATAATGACTTGTTGATGTAT
ATCACGGCCGCTCGATCAATAGCTGCATTTCAAGGAATGTGTGAAGAAGATGGTTGCATC
GCCGCTAGTCGTGATGATACTACAATAACTGCATTTGACGTTTTACATGATTCAGATTAT
GATCCTGGTAAAGCACTAGAAGCATTATTAAAGTGTCCTGTAGCTAAAGGTATTGAGAAG
AAATGGACGGAAGAGGAAACTAAGCGTTTCATTAAAGGCCTCCGTCACTTTGGGAAGAAT
TTTTTTCGTATACATAAAGACTTTTTGCCACATAAGCCAACAAGTGAACTAGTCGAGTTC
TATTACTTGTGGAAGAAAACGCCAGGCGCAAACAATAACCGACCACATCGCCGTCGACGT
CAAAGCTCGTTGCGACGCATCCGTAACACAAGAACAAATAGTACTGCAAGCAACACAAGC
ACGAAGAAGGAACAAACTCCAGAACCGCAGGCCATCGCAGAAGTTGAGTCTACGAGACCA
TCTTCTGTCGCAAAGGCCGAAGAAAACTCGTCCATTAGTGAGGACGATATAACTGAATGT
GATAGTGATTCAAGTAACACAAATAAAGGTTCAACAATAGGTGAAGATTCACCATCAAGA
ATGAGGACACGGAATAAGCAAACGACAAAGGAACAGAACGCCAATAAGCGTCCTAAACGC
GGCACTGAAACACCAGAAGCTGCTCCTATCGAAAGTAGTCCAAGAACGCCAAACCGTAAT
AATTCAAGCGGTGGTGGCGATAGTAAGAAAAAATCAACGAACAACAAAGATACGCCAAGT
AAGGCAAAGAAACGGGTTAATAACGACATTGAAAATGAGACAGATGATAAGGATGGCATT
AAAAGAAAAAGATCAGATAGTCCAGCTGAAAGTCTTACAACAGATAGTAGACCTGGATCA
GTTATGGATGAAGGAGAATCAAATAATAGTGAACCTGTTGAGAATTTAATAGCACTTTCT
AAAGATGCCGAAGAGAAAGATCCACTGTCAATTGCACTGCCAGGAACGCCAACAAGTAAT
GATACGCAATCAAAAGATAAACAAAATGACCGTTCGCCATCAGAAGTGGCTACACCCGAG
GATGTTGCAGACATTCCATCTCAGTCATCAAAGACTGGTGGAAATGGTGCAAATATAAAA
GAAAAGAAACTCAATGTGGTACCAGCCAGTAGTAGTAGCAATAGCAGTGAATTACCTCCA
GTTGCAAGAAATTCTGCAGTCATTCCAGGTAGTGGCAGTAGTAGTAGTAGCAGTTGTGAT
AGAGAGCTTCCAAAGGAACAAGAAATGCTCTCGCGACTTGCGAATCTCAAGCAAGAACCA
ACATCAGCAATTGTTGCAACAAATCAAAATGCCACAGCTGCAGTTTCAACGACACCTCCA
ATTAATCAAACAACAGCAGTGGTTTCAGCGGCATCATTCTCAATTAAGAAGGAACCAAAT
GAATTTGAGCAAACAGCACCAACGAGTCAGCAGCAGCCACAAATTAATGCCACTGATCTG
AAATTACGTGTGGCAGATATAAAAAGTGAAACGAGTAAAAATGGATCAAGTAATATATCA
AGTGATATCAGTAATCAAATGCCAAATGATCAAGATAACAATAATAATGCAGAAAATTTA
GTATGTAAGCCAAATGAAAAGCTAGCATCTGGTAACAGTAATAGTAATGCGCAACAAGCA
CCACCAGCATCAATAGCAGCAAATTTAACACCAAAAACTGAAGATCGACCCTCTGCCGGT
ACGGATTATTCAATGAAAACGTTTATGGAACAACAACAACAACCTTTGTTGCATCAACGT
GATCGTGATGGCTTTAAAATCGAGCAAAATGTCAAAGTTGAGTCGAAATCTCACGAGTTG
CATAAGCCAGCAGCAGGTTTGCCTCCTTTCATGCCAAATGAACGAGAAGATGGCAAATAT
CCTCCAAACGATGCACCACCAGGCATGTTGCGACATCCGTACGAGCCATTAATGAAATTT
GGCGATCCAATGATGAAATATGAGTTGCCTCATCCGGGTCTAGATTTAAAGTACTTACCT
CCAGATCATCCTGCTCGCTTGTATGCTGATGGTGCACTAAAAAGTCAGTTTTCGGCTGAT
AATCTCATAAAAGGTTCCTCACATTATCCTCAGCCGCATCCGCATGATTTAAAATACCAT
CCAGGATTACCTCCTTCAGCATCCGCTCCACCTTCATCGACTGCAACATCGCAGTCAAAT
GATGCACAACCACATGATAGTTCTTCACGAATAACACCGAATCAGGATTCGCAAGGAAGT
AATAGCAATTCACAGCCATCAACGTTGCCCTCACCGTCAACTCAGTCACCACTTACATCA
CAACCTTCAATTAACTCAATCTCACAGACATCATTTGTGTCACATCCAGGTTTGAGTTTA
GGTGCTAGCGGGCCACATCCTTCACTGCTGGGACCACTTGGCATACCTTCCTCACTTCCT
TCGTCAACCTCATCGCCTTTTCTGCCCATTCCGGGTGGTTTACATCGGCCAATACCTTCG
GATCCGATGTCAAATGCATCGCGCGCTCCTCCAACAAGCACAACAGCCACAAATAGTGGT
TCACTTACATCATCAGCTGCTGGCAGTGCATTCGGTCCTGGGAATTCATTTTACTCAACG
TCACGCGGTGCACTTGAAAATAATCGTGATGGCCTTCATCGAACGTCGCCACTTGGACCA
TTGCTTCATGGAAGCCCTCATCCATTATTATCGCATCCATTACCATTACATTTAGGACAT
CCGGGCATTCCCGGCCTACCACATCCGGCTGCACATTTGCCGCCACCTTTACATAATCAT
TTAATGCAACCGCTCGGCGGACCAAATACTCCATTGCCGCTTATAGGTGGCCCACCGCAG
CCATCGACAAATCCATTGACTAGTTTAATAGAAGCTGCTGGCAGAAGAACACCGACCTCG
GTACCATCATCAATTAATCACATTGCGCCTACATCTCATCAAAATTCGGTGATTCAATCG
CCTTCTGCACCATCAAATCTAAATTCGTCATCATCTCTAAGTCGAGCTTCACCACTTGTA
CATCCATCGCCAAGTGGTGCTTTTGGTGCACATCGACCGCAATCGCCTAGTTCGAATCAT
CCAGCTAATTTGAGTCGAAGTAGTCCGCTTCATCTTGGTCAGCCAGTTGGTCCATCACCA
GCTGCTATTTCAGCCGAGAGAGAACGTCAATTGATGAGACAACAATCGCCTCATATGACA
CCACCTCCATCATCATCAGCTTCTGCTTCATCACTCGTTCCCAGTCCTCTCAGTAAAATG
CCTGGTGCAAGTCCCCCAGTTGTGCGACATCCAACGATGCCATTGCCATTACCAATTATG
GGGCCAACTTCAGCCCTTCAAAGTCCAGTAATGCATCCATCACAAAATCCATATTCACAT
CATCTTTTACATCCATCGATGTTTTATCCTCATAATCCATTCAATTCGCCTTATCCTTAT
CCACCTTATGCGCCACCAGCTGCTTACTCGTATATGAAAGGTGCGCCATTAGATCCACAA
TTATTGCAGCATCCAACAAGTATTCCACCACCTCGATCTGATGAACCTCCTTCACCTCAT
GCTAATGGGCCAAAATCAGTGACTTCACTTCATGATAAAATTAAATCACCTGCACCATCA
AAAACACCTCAAAACAGTAACTCAAATACGCCCAGTAATCAATCAACACCGAGCGGATCA
GGTCCACAATCATCACATGTTGGACCTTATCCTTCACCATATGGCCAAGGTTCTCATCCA
TTTATGGAAAATACTCTTCCACCTGGTAAAACAAGTCACATTGAGGCATTGCGAGCTCAT
GCAGTGAGTGCAGCAGGAATGGGAAGTCATAGTCATCATGCAACAGAACCAGTTCACATA
GATGCCGTCGATATTGAACCTGATCCTGAACCTCCAAGTCCTGTTCATAATATCGATAGA
GGTCCAAGTCCTGAGGCTAAATTAGATGATACTGAATGTCATCGATCTCAATCAGCAATA
TTTGTACGACGATGCGATCGTGGTGATTACAATTCATGCACAAGAACCGATTTGGAATTT
AAACCAACACCAGATTCGAAGCTCGCGAGAAAACGTGAAGAGCGTGATAGAAAATTAGCA
GAAAAAGAACGTGAAAGAAAAGCTCAACAACAAGCTGCACAACAACAGCAGCAACAGCAA
GCACAAGCAGCCGCGGCAGCAGCAGCTCAGGCTAAACTTAAGAATGAAATCAAATCTCCA
TATGCTGATACACCAGCTTTGCGTCAATTGAGTGATTTTGCAAGACCACATGTTGGATTC
AGGGAGTTTGAAGAGCTTAAAAATCAACCAGGAATGCCAGGACCTGCTTCTCATCCTAAC
TGGATGGAATTTTATAGACGAGGCCTTCATCCTCCCTATCCAGGGCTACCTTATCCTGGA
ATTCCGGGCTTTGAACCTCGTCCTGAAAGATTGGGTATTCCCGGTGCTGGACCGCCTCTT
CCGATAGAATTGCAAAACGAACAAATGCAGCCTGAAGCAGCAGCAGGATTTCAACTACCA
CCGAATGTTCCACCATATCGTCCGAATCTTTTGATGCCGAGAGATCCTCATTCGGATGTT
TTACTTCGTATGAGTTATGCTGATCAGCTTCAAGCTGCCGAGCTTCAGAGACAATCTGCA
GCTTTCGATAGAGCTCATTCCATACATGAACAATATTATAGACAACAACAAGAACGTGAA
AAATTGAGAGCAATGGAAGAAGCAGCAGCACGTGTTGGCAAACATTAA
>g7545.t3 Gene=g7545 Length=1655
METASPSPSEPRIRVGPQHQALLPDYKPIQFYRSEEDEARDLEDPRWRPNVFLDNDLLMY
ITAARSIAAFQGMCEEDGCIAASRDDTTITAFDVLHDSDYDPGKALEALLKCPVAKGIEK
KWTEEETKRFIKGLRHFGKNFFRIHKDFLPHKPTSELVEFYYLWKKTPGANNNRPHRRRR
QSSLRRIRNTRTNSTASNTSTKKEQTPEPQAIAEVESTRPSSVAKAEENSSISEDDITEC
DSDSSNTNKGSTIGEDSPSRMRTRNKQTTKEQNANKRPKRGTETPEAAPIESSPRTPNRN
NSSGGGDSKKKSTNNKDTPSKAKKRVNNDIENETDDKDGIKRKRSDSPAESLTTDSRPGS
VMDEGESNNSEPVENLIALSKDAEEKDPLSIALPGTPTSNDTQSKDKQNDRSPSEVATPE
DVADIPSQSSKTGGNGANIKEKKLNVVPASSSSNSSELPPVARNSAVIPGSGSSSSSSCD
RELPKEQEMLSRLANLKQEPTSAIVATNQNATAAVSTTPPINQTTAVVSAASFSIKKEPN
EFEQTAPTSQQQPQINATDLKLRVADIKSETSKNGSSNISSDISNQMPNDQDNNNNAENL
VCKPNEKLASGNSNSNAQQAPPASIAANLTPKTEDRPSAGTDYSMKTFMEQQQQPLLHQR
DRDGFKIEQNVKVESKSHELHKPAAGLPPFMPNEREDGKYPPNDAPPGMLRHPYEPLMKF
GDPMMKYELPHPGLDLKYLPPDHPARLYADGALKSQFSADNLIKGSSHYPQPHPHDLKYH
PGLPPSASAPPSSTATSQSNDAQPHDSSSRITPNQDSQGSNSNSQPSTLPSPSTQSPLTS
QPSINSISQTSFVSHPGLSLGASGPHPSLLGPLGIPSSLPSSTSSPFLPIPGGLHRPIPS
DPMSNASRAPPTSTTATNSGSLTSSAAGSAFGPGNSFYSTSRGALENNRDGLHRTSPLGP
LLHGSPHPLLSHPLPLHLGHPGIPGLPHPAAHLPPPLHNHLMQPLGGPNTPLPLIGGPPQ
PSTNPLTSLIEAAGRRTPTSVPSSINHIAPTSHQNSVIQSPSAPSNLNSSSSLSRASPLV
HPSPSGAFGAHRPQSPSSNHPANLSRSSPLHLGQPVGPSPAAISAERERQLMRQQSPHMT
PPPSSSASASSLVPSPLSKMPGASPPVVRHPTMPLPLPIMGPTSALQSPVMHPSQNPYSH
HLLHPSMFYPHNPFNSPYPYPPYAPPAAYSYMKGAPLDPQLLQHPTSIPPPRSDEPPSPH
ANGPKSVTSLHDKIKSPAPSKTPQNSNSNTPSNQSTPSGSGPQSSHVGPYPSPYGQGSHP
FMENTLPPGKTSHIEALRAHAVSAAGMGSHSHHATEPVHIDAVDIEPDPEPPSPVHNIDR
GPSPEAKLDDTECHRSQSAIFVRRCDRGDYNSCTRTDLEFKPTPDSKLARKREERDRKLA
EKERERKAQQQAAQQQQQQQAQAAAAAAAQAKLKNEIKSPYADTPALRQLSDFARPHVGF
REFEELKNQPGMPGPASHPNWMEFYRRGLHPPYPGLPYPGIPGFEPRPERLGIPGAGPPL
PIELQNEQMQPEAAAGFQLPPNVPPYRPNLLMPRDPHSDVLLRMSYADQLQAAELQRQSA
AFDRAHSIHEQYYRQQQEREKLRAMEEAAARVGKH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g7545.t3 | CDD | cd11661 | SANT_MTA3_like | 121 | 166 | 2.66605E-24 |
| 10 | g7545.t3 | Coils | Coil | Coil | 323 | 343 | - |
| 9 | g7545.t3 | Coils | Coil | Coil | 1428 | 1460 | - |
| 7 | g7545.t3 | Gene3D | G3DSA:1.10.1740.200 | - | 9 | 115 | 5.6E-17 |
| 8 | g7545.t3 | Gene3D | G3DSA:1.10.10.60 | - | 116 | 182 | 1.4E-19 |
| 25 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 186 | - |
| 38 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 487 | - |
| 29 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 228 | - |
| 32 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 258 | - |
| 18 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 284 | - |
| 37 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 309 | - |
| 23 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 350 | - |
| 20 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 375 | - |
| 36 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 480 | - |
| 24 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 558 | - |
| 40 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 589 | - |
| 30 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 589 | - |
| 41 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 639 | - |
| 42 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 626 | - |
| 15 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 842 | - |
| 39 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 842 | - |
| 28 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 927 | - |
| 22 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 927 | - |
| 31 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1050 | 1081 | - |
| 33 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1050 | 1079 | - |
| 19 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1087 | 1106 | - |
| 14 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1106 | - |
| 27 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1165 | - |
| 16 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1134 | 1157 | - |
| 21 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1249 | 1307 | - |
| 26 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1273 | 1307 | - |
| 17 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1424 | 1449 | - |
| 35 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1424 | 1472 | - |
| 34 | g7545.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1450 | 1465 | - |
| 3 | g7545.t3 | PANTHER | PTHR13859 | ATROPHIN-RELATED | 10 | 546 | 2.3E-168 |
| 5 | g7545.t3 | PANTHER | PTHR13859:SF11 | GRUNGE, ISOFORM J | 10 | 546 | 2.3E-168 |
| 2 | g7545.t3 | PANTHER | PTHR13859 | ATROPHIN-RELATED | 1045 | 1649 | 2.3E-168 |
| 4 | g7545.t3 | PANTHER | PTHR13859:SF11 | GRUNGE, ISOFORM J | 1045 | 1649 | 2.3E-168 |
| 1 | g7545.t3 | Pfam | PF01448 | ELM2 domain | 13 | 66 | 4.1E-9 |
| 43 | g7545.t3 | ProSiteProfiles | PS51156 | ELM2 domain profile. | 11 | 113 | 25.26 |
| 44 | g7545.t3 | ProSiteProfiles | PS51293 | SANT domain profile. | 117 | 169 | 18.176 |
| 12 | g7545.t3 | SMART | SM01189 | ELM2_2 | 13 | 68 | 1.1E-11 |
| 13 | g7545.t3 | SMART | SM00717 | sant | 118 | 167 | 2.4E-7 |
| 6 | g7545.t3 | SUPERFAMILY | SSF46689 | Homeodomain-like | 121 | 168 | 4.22E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05628 (arginine-glutamic acid dipeptide repeats protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
