General information for g7545.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7545 is located on chr_2: 24455027..24458664 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7545 | g7545.t4 | isoform | g7545.t4 | 24454202 | 24456607 |
| chr_2 | g7545 | g7545.t4 | exon | g7545.t4.exon1 | 24454202 | 24454814 |
| chr_2 | g7545 | g7545.t4 | cds | g7545.t4.CDS1 | 24454326 | 24454547 |
| chr_2 | g7545 | g7545.t4 | exon | g7545.t4.exon2 | 24454926 | 24455229 |
| chr_2 | g7545 | g7545.t4 | exon | g7545.t4.exon3 | 24456330 | 24456607 |
| chr_2 | g7545 | g7545.t4 | TSS | g7545.t4 | NA | NA |
| chr_2 | g7545 | g7545.t4 | TTS | g7545.t4 | NA | NA |
Sequences
>g7545.t4 Gene=g7545 Length=1195
AGGCCTTCATCCTCCCTATCCAGGGCTACCTTATCCTGGAATTCCGGGCTTTGAACCTCG
TCCTGAAAGATTGGGTATTCCCGGTGCTGGACCGCCTCTTCCGATAGAATTGCAAAACGA
ACAAATGGTGAGTAGAGTTAAGAATTATTTTAAACCTCAAGTCCTCTCCACAAAAACACC
CAAAATAAGAAAAATACATTTCCACATTAGAAAAAGAAAGACATCTCTATTGTGCAAATT
AAGTAATTCTCTTTCGTTCACTGTTCTATGTTCATGTTTCGGATTTACATCACAAAAAAT
TGTATTTTCTCTATTTCACATCATTTGCAATCATCTTTTGTGTTAAACTCTCGCTTGATA
GTTGAAGAAGAAGAGAAGAAAAAAAGATGAATCCATCAATTGTGCAAATGTGTGCTTATA
TGTTTTTTATATCTTTTATTTTGGATTTCTTTCCGTCTTCTTAAGCTATCATTCATATCC
ATCATCTCTCCATCATTCTTTATCTCTTTTTACTTTTTTTATTTATTATTTTATTTTTTT
TTTTTGAGAAAAATTTCTTATGTCTTTTTATTTTTTCCATATTTTTTTCTCGATTTTCTG
TTGTGAACCGAAAGTTAGTTACGTTTGGCTGGTGAATATCATGCTCACTCACATACCCAT
TTACACCTACATTCTTCACAGCAGCCTGAAGCAGCAGCAGGATTTCAACTACCACGTGAG
TTTGTATTTCCATCCTAACGAATATTATTTCGCTCTGGGATGATTTGGATTGTGATTTTC
ATTGAATTTTACTGACTTTCAAACATTTTCTTTTTCAATAAATAGCGAATGTTCCACCAT
ATCGTCCGAATCTTTTGATGCCGAGAGATCCTCATTCGGATGTTTTACTTCGTATGAGTT
ATGCTGATCAGCTTCAAAAGCATGAACCTCAAAACATGATCAAGAAGTTTTCTTTTTTGA
TCAATTGTGGACTGTATAGTGACAATTCTTTTAGTTCAATTTTTAGTTATTTCATCAAAA
TAATTTTTTTTTTTCTTAAATTTATAAGAGACGAAAAGTATATGAATAAATTTAATTTTA
TTGTAAAATTTTTAACTAATGGAATGCGCCAAACGCCACTAACTTAGGATTTTTTTTAGA
TAAAAAAGGCTAAAGATTTTTTTAATTGTCTATTTAAACTATCTAATGATGATGA
>g7545.t4 Gene=g7545 Length=73
MVSRVKNYFKPQVLSTKTPKIRKIHFHIRKRKTSLLCKLSNSLSFTVLCSCFGFTSQKIV
FSLFHIICNHLLC
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
