Gene loci information

Transcript annotation

  • This transcript has been annotated as Glycerol-3-phosphate acyltransferase 3-like.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g755 g755.t2 TTS g755.t2 5742352 5742352
chr_3 g755 g755.t2 isoform g755.t2 5742541 5745920
chr_3 g755 g755.t2 exon g755.t2.exon1 5742541 5742979
chr_3 g755 g755.t2 cds g755.t2.CDS1 5742541 5742979
chr_3 g755 g755.t2 exon g755.t2.exon2 5743039 5743154
chr_3 g755 g755.t2 cds g755.t2.CDS2 5743039 5743154
chr_3 g755 g755.t2 exon g755.t2.exon3 5743445 5743681
chr_3 g755 g755.t2 cds g755.t2.CDS3 5743445 5743681
chr_3 g755 g755.t2 exon g755.t2.exon4 5743912 5744148
chr_3 g755 g755.t2 cds g755.t2.CDS4 5743912 5744148
chr_3 g755 g755.t2 exon g755.t2.exon5 5744261 5744518
chr_3 g755 g755.t2 cds g755.t2.CDS5 5744261 5744518
chr_3 g755 g755.t2 exon g755.t2.exon6 5744594 5744917
chr_3 g755 g755.t2 cds g755.t2.CDS6 5744594 5744917
chr_3 g755 g755.t2 exon g755.t2.exon7 5745783 5745920
chr_3 g755 g755.t2 cds g755.t2.CDS7 5745783 5745920
chr_3 g755 g755.t2 TSS g755.t2 5746034 5746034

Sequences

>g755.t2 Gene=g755 Length=1749
ATGGCGCTGTTAGAATTAGCCAGTTCACTGCTTCTGGCTCCTTTTAGTGTTTTAATTGTA
GTTATTTTATTAGCATCATTCGGAAAATCATTTGGAATTAGAAGACTTTATGTGCGGATG
CTAATAAGACTATTTGAGTATGGTCGTGCAAATATTGAGTCAGCAATAAGAAAAGACAGT
GTTGATAGAGGAAATGAAATTGAACATGAGATTGGAGAACAAGAAGAAAAGACTATCAAG
TTGAATTTAAACAGCAAAGACAAAATATTGCCAAAAACAAATGGACTGGTTAACAAGTCA
GGTCAAAATGGCCACATTAGTAATGGCACTTCTGTTATTACAAAAGAATCGCTCATTCTT
GTGCCCGATAAAGCAATTCAAACAACAACAGTGACAACGACAACTACAACAAGTATAAAT
CATAAAGAGCAATCACAAGTGATATCAGAAAACAACAATGAGGAAATTAAAGATGATAAA
CCACGCGATTTTAAGCTGGATGATTGTTTTGAATATATAAAATCAGGCATGGAAGCAATT
ATTGAAGATGAAGTAACTTCAAGATTTGAAGCTGAAGAGCTTAAGAATTGGAATTTGTTG
ACTCGTACTAATAGAGGATATGAATTCATATCATGGAAACTAACAGTCATATGGTTCATA
GGATTTCTCATAAGATATTTATTTCTTTTGCCTCTAAGGATAGTTATATGTTTTATTGGG
GTATGTTGGTTTATGGTATCCTTTCCTTTTGTTGGCCTTATTCCTAATGAACGTCTTCGT
CGTTGGGCAAACGATAAAGTTTTCCTTATTGGATTTAGAATCCTAGCACGAGCCCTTTCG
GCCCTTATTTATATTCATAATGAAGAATACAAACCGAAGAATTGTGGATTTTGTGTAGCA
AATCACACTTCTCCTATCGATGTCGCTATTTTATCAACTGACTGCACATATTCTTTGGTA
TTATGGCTAACAATTTGCACGGCAGTTGTGGGCTGGACATTACCAGAAGGTGACTTAAAA
CGACAAATTGTGAGCATCACACTCATTCATTGTTCGGAATTTCTCTCAAACGCAATCTCA
TCAGTAGTTAATTATCATAATCCTGAAAATCGACCCGTTAACGGAATTTGTGTAGCAAAT
CACACTTCACCAATCGACGCATTAATGTTAATGTGTGATAATTGTTATTCACTGATTGGT
CAACGACATGGTGGATTTTTAGGAATTTTACAAAGAGCTTTAGCTCGTGCATCACCACAT
ATTTGGTTTGAGAGAAATGAAGCAAAGGATAGATCTGCTGTTGCAGCTAGGCTACGAGAA
CATGTCTCAGATCCAAAAAATCCTCCTATTCTTATTTTTCCGGAAGGAACATGCATCAAT
AACACTTCTGTCATGCAATTCAAAAAAGGAAGTTTTGAAGTTGGTGGTGTCATTTATCCA
GTTGCCATAAAATATGATGCTCGTTTTGGTGATGCTTTTTGGAACAGTTCAAGATACTCA
ATGATGCAGTATCTTTACATGATGATGACTTCATGGGCTATTGTTTGTGATGTTTGGTAT
CTGCCGCCTATGTATTGCGAGGAGGGTGAGTCAGCTATAGATTTTGCGAATCGTGTTAAA
AGAACGATTGCAAAACAAGGTGGTCTTGTTGATCTCATGTGGGATGGTCAGTTAAAACGA
ATGAAAGCTAAAAAAGAATGGAAAGAATTGCAGCAAGAAAAATTCGCAGAGCGACTTAAA
GGAGATTAG

>g755.t2 Gene=g755 Length=582
MALLELASSLLLAPFSVLIVVILLASFGKSFGIRRLYVRMLIRLFEYGRANIESAIRKDS
VDRGNEIEHEIGEQEEKTIKLNLNSKDKILPKTNGLVNKSGQNGHISNGTSVITKESLIL
VPDKAIQTTTVTTTTTTSINHKEQSQVISENNNEEIKDDKPRDFKLDDCFEYIKSGMEAI
IEDEVTSRFEAEELKNWNLLTRTNRGYEFISWKLTVIWFIGFLIRYLFLLPLRIVICFIG
VCWFMVSFPFVGLIPNERLRRWANDKVFLIGFRILARALSALIYIHNEEYKPKNCGFCVA
NHTSPIDVAILSTDCTYSLVLWLTICTAVVGWTLPEGDLKRQIVSITLIHCSEFLSNAIS
SVVNYHNPENRPVNGICVANHTSPIDALMLMCDNCYSLIGQRHGGFLGILQRALARASPH
IWFERNEAKDRSAVAARLREHVSDPKNPPILIFPEGTCINNTSVMQFKKGSFEVGGVIYP
VAIKYDARFGDAFWNSSRYSMMQYLYMMMTSWAIVCDVWYLPPMYCEEGESAIDFANRVK
RTIAKQGGLVDLMWDGQLKRMKAKKEWKELQQEKFAERLKGD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
25 g755.t2 CDD cd07991 LPLAT_LPCAT1-like 362 560 6.98937E-97
3 g755.t2 PANTHER PTHR23063:SF10 GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3 151 320 9.0E-184
5 g755.t2 PANTHER PTHR23063 PHOSPHOLIPID ACYLTRANSFERASE 151 320 9.0E-184
2 g755.t2 PANTHER PTHR23063:SF10 GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3 321 578 9.0E-184
4 g755.t2 PANTHER PTHR23063 PHOSPHOLIPID ACYLTRANSFERASE 321 578 9.0E-184
1 g755.t2 Pfam PF01553 Acyltransferase 363 483 4.7E-20
17 g755.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
24 g755.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 27 -
12 g755.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 28 208 -
23 g755.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 209 228 -
16 g755.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 229 233 -
21 g755.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 234 255 -
14 g755.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 256 266 -
20 g755.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 267 285 -
15 g755.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 286 315 -
22 g755.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 316 334 -
13 g755.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 335 503 -
19 g755.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 504 521 -
18 g755.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 522 582 -
11 g755.t2 SMART SM00563 plsc_2 375 486 1.2E-26
10 g755.t2 SUPERFAMILY SSF69593 Glycerol-3-phosphate (1)-acyltransferase 366 525 9.29E-7
9 g755.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -
6 g755.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 209 228 -
8 g755.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 232 254 -
7 g755.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 267 286 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values