General information for g7559.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7559 is located on chr_2: 24523018..24524312 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7559 | g7559.t4 | isoform | g7559.t4 | 24521976 | 24524312 |
| chr_2 | g7559 | g7559.t4 | exon | g7559.t4.exon1 | 24521976 | 24523192 |
| chr_2 | g7559 | g7559.t4 | TTS | g7559.t4 | 24521992 | 24521992 |
| chr_2 | g7559 | g7559.t4 | cds | g7559.t4.CDS1 | 24523181 | 24523192 |
| chr_2 | g7559 | g7559.t4 | exon | g7559.t4.exon2 | 24523255 | 24524076 |
| chr_2 | g7559 | g7559.t4 | cds | g7559.t4.CDS2 | 24523255 | 24523638 |
| chr_2 | g7559 | g7559.t4 | exon | g7559.t4.exon3 | 24524150 | 24524312 |
| chr_2 | g7559 | g7559.t4 | TSS | g7559.t4 | 24524278 | 24524278 |
Sequences
>g7559.t4 Gene=g7559 Length=2202
ATGGGTAAAATTATGTTGGATATTTCACGCATGCACCGGTGAGAAAGAGTTTTGGGTAAA
ATGTTGTGAATTTTATTATCTCAAAGAAATCTTGACAATTTTAATCAATTTTTGTAAAAA
TTGTGATGAATTCTTCTGCGGACTTGTATTTAAAATGTGAAGTATTTTTTATTTTTTCTC
TCATCTAAAAAAAATTATTGATTTTTTCTTGTGTAAATCGTGAAACTTTTATTTTTGACT
TGATATTTTTTTGATTACCTTGGCTCCCTTTTTTGTGTTTGCGAAAACAAGTGATAGAGA
GATTGATACATTACTGAAAACAATTTTTTGCAGTGAAGTTTTTAAAGGACTAAATAAAAC
TCGTGGGCTCTTTTTGCGATATCGCGAACTTCAAAACGATACGAGTGCAAGTGATCAACA
AACGGACCTTGAGTATACAACTACTGAATTGAGAAACTCATTGAGATCAATTGAATGGGA
TCTTGAAGATTTAGAAGATACAATTGCAATAGCTGAGAAAAATCCAAAACATAAAATCGA
CTTACAGGAACTAAATCAGCGAAGGAATTTCATAATTGCCACAAAAAATGAGATCAAGTC
TATGAAAGATAAAATTAGTATTTTAAAGAATCGTGATAAAGATATAACTGCGATTCAGCC
ACTACTTGACGACGATCCTTCACCAAAGAACACTTCAAACAGTAATTGCAACGGTAATAC
ATCAAATTCTATTGGGAATAATTTAATGAGCAGTATGGCAGCAGCAAGACACAGCGGTAC
TAAATATAAGAAACTCGAAAACATCAACGACAGTCCCAGTCATAATGGAAACTTTAACAG
TGACAGTGCTTTTATGGGCGAAACAATTTCAATTCAACAGAGAATGCTACAATCTCAAGA
TTTACAAATCGATGTTTTGAGCGATTCAATAGGCACATTAAAAACCGTTAGTCGACAAAT
TGGTGTAGAAATTGATGAGCAAGCTTATGCTAGATGAATTTGGTAATGAATTAGATGCCA
CAGACTCAAAATTGGATGCTACAATGAAGAAAGTTGGAAAAGTGCTTCATTTATCAGGCA
ACGATAGACGTCAATGGATGGCAATTGGATTTCTGAGCATCCTTTTAATAGTTGTGATAA
TTCTTTTCATAATTCTTTAAAAAGGCTAACAGGACACAACAGAAAACCCTAAATAAGACA
TTAATGAATAAAAACTGATCTCGTTATTGAAGTGCATAAAGTGAATTTGTGAGAAAATAC
TGATTTGTGTGTAAATAAGTGAAGTTTGATTTCTTCTTTAAAATGTGAGGAAACATTTAA
AATTATTAAGACAGAAGGAAAATGATTATATATATACATAGTCAACTATTTTTGTAGTTT
TAAAATTTAGAATTTTTTCTTTCCTTTTATCCTATACCTTGTAGTGATGATAAATTTTAT
ATTTAATAAACTTTGAATGTGGAAATTTCCATTAATTTTCACTTCTCAATTAAATGTAAC
ACAAAAAATAATTGGCAACCAATTATTTAAAAAAATAATGGAAAAACCAACACAAAAGAT
GAAACCAATATTTATATCAAATTAATAATATGCAATAATATAATTTTGATGTTTTTCACT
CTTTTTTGTAGATAAAAATTTATCAAACTAAACAAAATAATAATCTATTTAAATTATCTT
CCTAAAAATGTCAAGAAAATATAAAGTCTAATACACACACAATACCTATATTTTAAATGT
TTAATCAAATTACTTGATAACTCTAGTCAACTAGTGAGAAAATGAAAAATTATTATGATA
TATAATATAGACACATAAACATCAATTTCATACATTTTGCATGTTGGGATCAGAACAGAA
AAAAATGATGTTTTCTGCAGCTAGATAATGAAAAGAAAATGATTAAACATCAATTTTCAG
TTTAGAATGAATTTATTACAACAAAACACAAAACAAAACTACGGTTAATACAATATCAGC
CAAATTTTCAATTCAAATTTCATTTATTTATTAAACGATAGAATAAAGTGAATTAATTTT
ATCTTTAACCGTGATAACAAAATGAAGAAAATATATATCTCTGCAACAAAATACAATAAT
TTTCTCATAGACATTCCATCATACATTCTGTAATCTAACAAGAAGAAATTAAAGCAGAAA
TAAAACAGAAATAATTTGATAAATTCAAAAGATCAATTTTTT
>g7559.t4 Gene=g7559 Length=131
MKDKISILKNRDKDITAIQPLLDDDPSPKNTSNSNCNGNTSNSIGNNLMSSMAAARHSGT
KYKKLENINDSPSHNGNFNSDSAFMGETISIQQRMLQSQDLQIDVLSDSIGTLKTVSRQI
GVEIDEQAYAR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7559.t4 | Coils | Coil | Coil | 126 | 131 | - |
| 4 | g7559.t4 | Gene3D | G3DSA:1.20.5.110 | - | 100 | 129 | 7.5E-7 |
| 2 | g7559.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 40 | - |
| 3 | g7559.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 40 | - |
| 1 | g7559.t4 | SUPERFAMILY | SSF58038 | SNARE fusion complex | 88 | 128 | 1.7E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed