Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 6a14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7567 g7567.t1 TTS g7567.t1 24576864 24576864
chr_2 g7567 g7567.t1 isoform g7567.t1 24576917 24579181
chr_2 g7567 g7567.t1 exon g7567.t1.exon1 24576917 24577099
chr_2 g7567 g7567.t1 cds g7567.t1.CDS1 24576917 24577099
chr_2 g7567 g7567.t1 exon g7567.t1.exon2 24577442 24577671
chr_2 g7567 g7567.t1 cds g7567.t1.CDS2 24577442 24577671
chr_2 g7567 g7567.t1 exon g7567.t1.exon3 24577747 24577918
chr_2 g7567 g7567.t1 cds g7567.t1.CDS3 24577747 24577918
chr_2 g7567 g7567.t1 exon g7567.t1.exon4 24578146 24578510
chr_2 g7567 g7567.t1 cds g7567.t1.CDS4 24578146 24578510
chr_2 g7567 g7567.t1 exon g7567.t1.exon5 24578572 24578988
chr_2 g7567 g7567.t1 cds g7567.t1.CDS5 24578572 24578988
chr_2 g7567 g7567.t1 exon g7567.t1.exon6 24579043 24579181
chr_2 g7567 g7567.t1 cds g7567.t1.CDS6 24579043 24579181
chr_2 g7567 g7567.t1 TSS g7567.t1 24579537 24579537

Sequences

>g7567.t1 Gene=g7567 Length=1506
ATGCACATTGTTGACATATTTCTCTTTATTATATCGGTGATATTTATCATTTGGACATAT
TTTAAGATAAAATTTACGTACTGGAAAAGTCTTGGTGTTCCTTTTATTAAACCGAGAATT
CCTTACGGGAATATACAAGGACGTCGCAGAATATTACATTCTTCGCAAGTCTTTAAGAAT
TTTTATGATGAAATAAAAGCGCAAGGAAAATTTGGTGGTATATATTTTTTCACTCGACCA
GCAATCGTTGTAACTGATTTGGATTTAGTGAAAAAAATCTTGATAAAAGATTTTAGTTAT
TTTCATGATCGTGGCATGTACTATAATGTCAAAGATGATCCATTATCAGGTCATTTATTA
AATTTAGAGGGTGATAAATGGAAAAAATTAAGAGAAAAACTGACACCAACTTTCACATCT
ACTAAAATGAAATATATGTTACCAACTGTGCTTGATGTCTCAAAAAAACTTGAAACTTTT
ATGATAAAAACCATTGAAGAAGATTCAGAACCTGAAATTAAAAAAATTCTTGCACGATTT
ACAACTGATATTATTGGATCTGTTGCCTTTGGGATTGTTTGCGCCTCGCTAGAAGATCCA
AATGCGAAATTTCTTGAGATGGGTACCAAAGTCTTTGAGCAACCGCGCAATAATTTTATA
AAACAAATTATTGCACTCACTTATCCAGATTTTGCGCGAAAAATAGGCATAAAAACAGTT
CGTGAAGATGTTTCTAAATTTTTTATGAAGATTGTGAAGGATGTTGTTGAATATCGCGAG
AAAAATAACATTAAAAGGAATGACTTTATGGATTTATTGCTACAACTGAAAGAGGAGGGC
ACATTGCAAAATGAAGCACACCATTCAGGAAAGATGACAATCGAAGAGATAGCAGCTCAA
GTTTTTGTATTTTTCCTTGCTGGATTTGAAACATCGTCAACAACAATGACATTCTGTCTT
CACGAGTTAAGTTTAAATCGAGAAATTCAAGAGAAAGCACGTCAAAATGTAATTGAAGTA
CTCGCACGTCATAATGGAGAAATAACTTATGAAGCTCTTTCTGAAATGACTTATTTAGAA
CAGTGTATAAATGAAGCTTTAAGAAAATATCCACCAGTTGGCTTAATACGCACATGTACA
AAGGATTATCGTGTGCCAGATACTGATGTTGTATTGCAAAAAGGAACAACTGTAGTAGTT
TCAGTTTATGGGATTCATCATGACTCAGAAATTTATGAAAATCCACAGGAGTACAATCCT
GAACGATTCACACCTGAAAATATAGCCAAAAGACATCAAATGGCTTTTTTGCCGTTTGGA
CAGGGTCCTCGGGTATGCATTGGTGAACGTTTTGGATATATTGAAACAAAAGTTGGTCTC
GCAACGCTACTTTCTAAATTTAGATTTGAACCATCATCTAAAACTAAAACACCCATTGAA
TTTAATAAAAAGAATTTCATTCTCTCCGTTGATGGTGGAATGTTTTTAAAAATATCAAAA
CTTTAA

>g7567.t1 Gene=g7567 Length=501
MHIVDIFLFIISVIFIIWTYFKIKFTYWKSLGVPFIKPRIPYGNIQGRRRILHSSQVFKN
FYDEIKAQGKFGGIYFFTRPAIVVTDLDLVKKILIKDFSYFHDRGMYYNVKDDPLSGHLL
NLEGDKWKKLREKLTPTFTSTKMKYMLPTVLDVSKKLETFMIKTIEEDSEPEIKKILARF
TTDIIGSVAFGIVCASLEDPNAKFLEMGTKVFEQPRNNFIKQIIALTYPDFARKIGIKTV
REDVSKFFMKIVKDVVEYREKNNIKRNDFMDLLLQLKEEGTLQNEAHHSGKMTIEEIAAQ
VFVFFLAGFETSSTTMTFCLHELSLNREIQEKARQNVIEVLARHNGEITYEALSEMTYLE
QCINEALRKYPPVGLIRTCTKDYRVPDTDVVLQKGTTVVVSVYGIHHDSEIYENPQEYNP
ERFTPENIAKRHQMAFLPFGQGPRVCIGERFGYIETKVGLATLLSKFRFEPSSKTKTPIE
FNKKNFILSVDGGMFLKISKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g7567.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 16 501 5.1E-135
2 g7567.t1 PANTHER PTHR24292 CYTOCHROME P450 5 501 2.6E-196
3 g7567.t1 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 5 501 2.6E-196
9 g7567.t1 PRINTS PR00463 E-class P450 group I signature 65 84 8.7E-23
8 g7567.t1 PRINTS PR00463 E-class P450 group I signature 89 110 8.7E-23
6 g7567.t1 PRINTS PR00463 E-class P450 group I signature 296 313 8.7E-23
14 g7567.t1 PRINTS PR00385 P450 superfamily signature 307 324 7.9E-11
10 g7567.t1 PRINTS PR00463 E-class P450 group I signature 316 342 8.7E-23
13 g7567.t1 PRINTS PR00385 P450 superfamily signature 361 372 7.9E-11
7 g7567.t1 PRINTS PR00463 E-class P450 group I signature 401 425 8.7E-23
5 g7567.t1 PRINTS PR00463 E-class P450 group I signature 436 446 8.7E-23
12 g7567.t1 PRINTS PR00385 P450 superfamily signature 437 446 7.9E-11
4 g7567.t1 PRINTS PR00463 E-class P450 group I signature 446 469 8.7E-23
11 g7567.t1 PRINTS PR00385 P450 superfamily signature 446 457 7.9E-11
1 g7567.t1 Pfam PF00067 Cytochrome P450 43 489 1.1E-105
18 g7567.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
19 g7567.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 23 -
17 g7567.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 24 501 -
21 g7567.t1 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 439 448 -
15 g7567.t1 SUPERFAMILY SSF48264 Cytochrome P450 43 498 6.94E-116
20 g7567.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 2 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values