Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 6a14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7567 g7567.t2 TTS g7567.t2 24576555 24576555
chr_2 g7567 g7567.t2 isoform g7567.t2 24576618 24579181
chr_2 g7567 g7567.t2 exon g7567.t2.exon1 24576618 24577099
chr_2 g7567 g7567.t2 TSS g7567.t2 24576778 24576778
chr_2 g7567 g7567.t2 cds g7567.t2.CDS1 24576917 24577099
chr_2 g7567 g7567.t2 exon g7567.t2.exon2 24577442 24577671
chr_2 g7567 g7567.t2 cds g7567.t2.CDS2 24577442 24577671
chr_2 g7567 g7567.t2 exon g7567.t2.exon3 24577747 24577940
chr_2 g7567 g7567.t2 cds g7567.t2.CDS3 24577747 24577894
chr_2 g7567 g7567.t2 exon g7567.t2.exon4 24578146 24578510
chr_2 g7567 g7567.t2 exon g7567.t2.exon5 24578572 24579181

Sequences

>g7567.t2 Gene=g7567 Length=1881
ATGCACATTGTTGACATATTTCTCTTTATTATATCGGTGATATTTATCATTTGGACATAT
TTTAAGATAAAATTTACGTACTGGAAAAGTCTTGGTGTTCCTTTTATTAAACCGAGAATT
CCTTACGGGAATATACAAGGTAATGACTAATAAATATACACAAGAATTTCTAATAAAAAT
ATTGCATTAACAGGACGTCGCAGAATATTACATTCTTCGCAAGTCTTTAAGAATTTTTAT
GATGAAATAAAAGCGCAAGGAAAATTTGGTGGTATATATTTTTTCACTCGACCAGCAATC
GTTGTAACTGATTTGGATTTAGTGAAAAAAATCTTGATAAAAGATTTTAGTTATTTTCAT
GATCGTGGCATGTACTATAATGTCAAAGATGATCCATTATCAGGTCATTTATTAAATTTA
GAGGGTGATAAATGGAAAAAATTAAGAGAAAAACTGACACCAACTTTCACATCTACTAAA
ATGAAATATATGTTACCAACTGTGCTTGATGTCTCAAAAAAACTTGAAACTTTTATGATA
AAAACCATTGAAGAAGATTCAGAACCTGAAATTAAAAAAATTCTTGCACGATTTACAACT
GATATTATTGGATCTGTTGCCTTTGGGATTGTTTGCGCCTCGCTAGAAGATCCAAATGCG
AAATTTCTTGAGATGGGTACCAAAGTCTTTGAGCAACCGCGCAATAATTTTATAAAACAA
ATTATTGCACTCACTTATCCAGATTTTGCGCGAAAAATAGGCATAAAAACAGTTCGTGAA
GATGTTTCTAAATTTTTTATGAAGATTGTGAAGGATGTTGTTGAATATCGCGAGAAAAAT
AACATTAAAAGGAATGACTTTATGGATTTATTGCTACAACTGAAAGAGGAGGGCACATTG
CAAAATGAAGCACACCATTCAGGAAAGATGACAATCGAAGAGATAGCAGCTCAAGTTTTT
GTATTTTTCCTTGCTATACTTTTTTATTGTCTTTTAGGGATTTGAAACATCGTCAACAAC
AATGACATTCTGTCTTCACGAGTTAAGTTTAAATCGAGAAATTCAAGAGAAAGCACGTCA
AAATGTAATTGAAGTACTCGCACGTCATAATGGAGAAATAACTTATGAAGCTCTTTCTGA
AATGACTTATTTAGAACAGTGTATAAATGAAGCTTTAAGAAAATATCCACCAGTTGGCTT
AATACGCACATGTACAAAGGATTATCGTGTGCCAGATACTGATGTTGTATTGCAAAAAGG
AACAACTGTAGTAGTTTCAGTTTATGGGATTCATCATGACTCAGAAATTTATGAAAATCC
ACAGGAGTACAATCCTGAACGATTCACACCTGAAAATATAGCCAAAAGACATCAAATGGC
TTTTTTGCCGTTTGGACAGGGTCCTCGGGTATGCATTGGTGAACGTTTTGGATATATTGA
AACAAAAGTTGGTCTCGCAACGCTACTTTCTAAATTTAGATTTGAACCATCATCTAAAAC
TAAAACACCCATTGAATTTAATAAAAAGAATTTCATTCTCTCCGTTGATGGTGGAATGTT
TTTAAAAATATCAAAACTTTAATCAATGTAATGAACATTTTCTTTTATAAATAAAATTAA
TCAATAATTACAATTACTTACACTGCTTTATAATTATTGAATAAAGAGATAAGCGCAGTA
AATAGAGTGTATTGTTGTATAAAAATTTAATTTAAAACTTAGTCATAAAGCAGACCTCCC
CAAGAAAAGAAGAGAATTACACAGAAAAAAAGAATATAAAAAACTCTTAAAAATATGATG
CTTTGGCTTACTTATTTGTACTGCGGAAGAGAATTCGATGACGATGATGATGAAGAGTTT
ATTGAAGAGTCACAAGGGCTT

>g7567.t2 Gene=g7567 Length=186
MTFCLHELSLNREIQEKARQNVIEVLARHNGEITYEALSEMTYLEQCINEALRKYPPVGL
IRTCTKDYRVPDTDVVLQKGTTVVVSVYGIHHDSEIYENPQEYNPERFTPENIAKRHQMA
FLPFGQGPRVCIGERFGYIETKVGLATLLSKFRFEPSSKTKTPIEFNKKNFILSVDGGMF
LKISKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g7567.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 179 1.4E-65
2 g7567.t2 PANTHER PTHR24292 CYTOCHROME P450 1 186 5.2E-77
3 g7567.t2 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 1 186 5.2E-77
5 g7567.t2 PRINTS PR00463 E-class P450 group I signature 1 26 7.8E-17
10 g7567.t2 PRINTS PR00385 P450 superfamily signature 10 23 2.3E-7
11 g7567.t2 PRINTS PR00385 P450 superfamily signature 46 57 2.3E-7
4 g7567.t2 PRINTS PR00463 E-class P450 group I signature 86 110 7.8E-17
7 g7567.t2 PRINTS PR00463 E-class P450 group I signature 121 131 7.8E-17
9 g7567.t2 PRINTS PR00385 P450 superfamily signature 122 131 2.3E-7
6 g7567.t2 PRINTS PR00463 E-class P450 group I signature 131 154 7.8E-17
8 g7567.t2 PRINTS PR00385 P450 superfamily signature 131 142 2.3E-7
1 g7567.t2 Pfam PF00067 Cytochrome P450 1 174 6.9E-59
13 g7567.t2 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 124 133 -
12 g7567.t2 SUPERFAMILY SSF48264 Cytochrome P450 1 183 9.3E-60

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values