Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable cytochrome P450 6a14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7567 g7567.t3 TTS g7567.t3 24576864 24576864
chr_2 g7567 g7567.t3 isoform g7567.t3 24576917 24577889
chr_2 g7567 g7567.t3 exon g7567.t3.exon1 24576917 24577099
chr_2 g7567 g7567.t3 cds g7567.t3.CDS1 24576917 24577099
chr_2 g7567 g7567.t3 exon g7567.t3.exon2 24577442 24577671
chr_2 g7567 g7567.t3 cds g7567.t3.CDS2 24577442 24577671
chr_2 g7567 g7567.t3 exon g7567.t3.exon3 24577747 24577889
chr_2 g7567 g7567.t3 cds g7567.t3.CDS3 24577747 24577774
chr_2 g7567 g7567.t3 TSS g7567.t3 NA NA

Sequences

>g7567.t3 Gene=g7567 Length=556
ATTCTGTCTTCACGAGTTAAGTTTAAATCGAGAAATTCAAGAGAAAGCACGTCAAAATGT
AATTGAAGTACTCGCACGTCATAATGGAGAAATAACTTATGAAGCTCTTTCTGAAATGAC
TTATTTAGAACAGTGTATAAATGAAGCTTTAAGAAAATATCCACCAGTTGGCTTAATACG
CACATGTACAAAGGATTATCGTGTGCCAGATACTGATGTTGTATTGCAAAAAGGAACAAC
TGTAGTAGTTTCAGTTTATGGGATTCATCATGACTCAGAAATTTATGAAAATCCACAGGA
GTACAATCCTGAACGATTCACACCTGAAAATATAGCCAAAAGACATCAAATGGCTTTTTT
GCCGTTTGGACAGGGTCCTCGGGTATGCATTGGTGAACGTTTTGGATATATTGAAACAAA
AGTTGGTCTCGCAACGCTACTTTCTAAATTTAGATTTGAACCATCATCTAAAACTAAAAC
ACCCATTGAATTTAATAAAAAGAATTTCATTCTCTCCGTTGATGGTGGAATGTTTTTAAA
AATATCAAAACTTTAA

>g7567.t3 Gene=g7567 Length=146
MTYLEQCINEALRKYPPVGLIRTCTKDYRVPDTDVVLQKGTTVVVSVYGIHHDSEIYENP
QEYNPERFTPENIAKRHQMAFLPFGQGPRVCIGERFGYIETKVGLATLLSKFRFEPSSKT
KTPIEFNKKNFILSVDGGMFLKISKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7567.t3 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 146 1.5E-50
2 g7567.t3 PANTHER PTHR24292 CYTOCHROME P450 1 146 1.0E-58
3 g7567.t3 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 1 146 1.0E-58
10 g7567.t3 PRINTS PR00465 E-class P450 group IV signature 1 17 2.5E-16
4 g7567.t3 PRINTS PR00385 P450 superfamily signature 6 17 1.1E-5
8 g7567.t3 PRINTS PR00465 E-class P450 group IV signature 51 69 2.5E-16
7 g7567.t3 PRINTS PR00465 E-class P450 group IV signature 75 91 2.5E-16
6 g7567.t3 PRINTS PR00385 P450 superfamily signature 82 91 1.1E-5
5 g7567.t3 PRINTS PR00385 P450 superfamily signature 91 102 1.1E-5
9 g7567.t3 PRINTS PR00465 E-class P450 group IV signature 91 109 2.5E-16
1 g7567.t3 Pfam PF00067 Cytochrome P450 1 134 7.0E-48
12 g7567.t3 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 84 93 -
11 g7567.t3 SUPERFAMILY SSF48264 Cytochrome P450 1 143 1.22E-47

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values