Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable cytochrome P450 6a20.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7567 g7567.t4 isoform g7567.t4 24578584 24579181
chr_2 g7567 g7567.t4 exon g7567.t4.exon1 24578584 24578988
chr_2 g7567 g7567.t4 cds g7567.t4.CDS1 24578585 24578988
chr_2 g7567 g7567.t4 TTS g7567.t4 24578608 24578608
chr_2 g7567 g7567.t4 exon g7567.t4.exon2 24579043 24579181
chr_2 g7567 g7567.t4 cds g7567.t4.CDS2 24579043 24579181
chr_2 g7567 g7567.t4 TSS g7567.t4 24579537 24579537

Sequences

>g7567.t4 Gene=g7567 Length=544
ATGCACATTGTTGACATATTTCTCTTTATTATATCGGTGATATTTATCATTTGGACATAT
TTTAAGATAAAATTTACGTACTGGAAAAGTCTTGGTGTTCCTTTTATTAAACCGAGAATT
CCTTACGGGAATATACAAGGACGTCGCAGAATATTACATTCTTCGCAAGTCTTTAAGAAT
TTTTATGATGAAATAAAAGCGCAAGGAAAATTTGGTGGTATATATTTTTTCACTCGACCA
GCAATCGTTGTAACTGATTTGGATTTAGTGAAAAAAATCTTGATAAAAGATTTTAGTTAT
TTTCATGATCGTGGCATGTACTATAATGTCAAAGATGATCCATTATCAGGTCATTTATTA
AATTTAGAGGGTGATAAATGGAAAAAATTAAGAGAAAAACTGACACCAACTTTCACATCT
ACTAAAATGAAATATATGTTACCAACTGTGCTTGATGTCTCAAAAAAACTTGAAACTTTT
ATGATAAAAACCATTGAAGAAGATTCAGAACCTGAAATTAAAAAAATTCTTGCACGATTT
ACAA

>g7567.t4 Gene=g7567 Length=181
MHIVDIFLFIISVIFIIWTYFKIKFTYWKSLGVPFIKPRIPYGNIQGRRRILHSSQVFKN
FYDEIKAQGKFGGIYFFTRPAIVVTDLDLVKKILIKDFSYFHDRGMYYNVKDDPLSGHLL
NLEGDKWKKLREKLTPTFTSTKMKYMLPTVLDVSKKLETFMIKTIEEDSEPEIKKILARF
T

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g7567.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 16 181 7.5E-30
2 g7567.t4 PANTHER PTHR24292 CYTOCHROME P450 5 181 4.1E-56
3 g7567.t4 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 5 181 4.1E-56
1 g7567.t4 Pfam PF00067 Cytochrome P450 43 181 1.7E-15
8 g7567.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
9 g7567.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 23 -
7 g7567.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 24 181 -
5 g7567.t4 SUPERFAMILY SSF48264 Cytochrome P450 42 181 1.44E-22
4 g7567.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed