General information for g7575.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7575 is located on chr_2: 24611131..24611309 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7575 | g7575.t10 | TTS | g7575.t10 | 24610208 | 24610208 |
| chr_2 | g7575 | g7575.t10 | isoform | g7575.t10 | 24610323 | 24611309 |
| chr_2 | g7575 | g7575.t10 | exon | g7575.t10.exon1 | 24610323 | 24610390 |
| chr_2 | g7575 | g7575.t10 | cds | g7575.t10.CDS1 | 24610323 | 24610390 |
| chr_2 | g7575 | g7575.t10 | exon | g7575.t10.exon2 | 24610457 | 24610879 |
| chr_2 | g7575 | g7575.t10 | cds | g7575.t10.CDS2 | 24610457 | 24610879 |
| chr_2 | g7575 | g7575.t10 | exon | g7575.t10.exon3 | 24611125 | 24611309 |
| chr_2 | g7575 | g7575.t10 | cds | g7575.t10.CDS3 | 24611125 | 24611152 |
| chr_2 | g7575 | g7575.t10 | TSS | g7575.t10 | 24611447 | 24611447 |
Sequences
>g7575.t10 Gene=g7575 Length=676
ATGTCTTTTTTCAAGAATTTATTCGGCAAAAAAGAGCCTCCAGCTCCTTCGACTTCAGAG
AGTATTCAGAAATTGCGTGATACGGAAAATATGTTGTTAAAAAAACAAGAATTTTTAGAG
CAAAAGGTAGAACAAGAGCATGAAATAGCAAAAAAGAATGCTTCGACAAACAAAAGAGGT
GAGTTCCTTAAAGAGGAAGAAGAGATACGAACAGCAATTAGAACAACTTCAGGGAACATT
GACAACAATTGAGACTCAACGAGAGGCATTAGAGAACGCTAACACGAATGCAGCCGTCCT
CGATACAATGAAAGGAGCTTCAGATGCGCTCAAGAAAACGCATAAGGATATGAATATTGA
TAATGTACATGATATGATGGATGACATTGCAGAACAAAATGATGTTGCAAATGAGATTTC
AAACGCAATTTCCACTGGTATTATTTCACCTGGTGTTGATGAGGATGAGCTTGCAAAGGA
ATTAGAAGAGTTGGAACAAGAAGGACTAGATTCAGAATTATTAAATGTTGGCCCGGCGCC
GAACAAACTCCCCGAAGTTCCAAGCACAGATTTACCGACAGCTTCGAAGGACAAAGAAAA
GAAAAAAGCAAAACCAGTCGCTGCAGATGAAGACGATGATCCAGATATGAAGGAATTAAT
GCAATGGGCTAATTAA
>g7575.t10 Gene=g7575 Length=172
MLRQTKEVSSLKRKKRYEQQLEQLQGTLTTIETQREALENANTNAAVLDTMKGASDALKK
THKDMNIDNVHDMMDDIAEQNDVANEISNAISTGIISPGVDEDELAKELEELEQEGLDSE
LLNVGPAPNKLPEVPSTDLPTASKDKEKKKAKPVAADEDDDPDMKELMQWAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7575.t10 | Coils | Coil | Coil | 14 | 41 | - |
| 6 | g7575.t10 | Gene3D | G3DSA:1.10.287.1060 | - | 4 | 39 | 8.2E-10 |
| 5 | g7575.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 172 | - |
| 4 | g7575.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 159 | - |
| 2 | g7575.t10 | PANTHER | PTHR22761 | CHARGED MULTIVESICULAR BODY PROTEIN | 10 | 168 | 1.2E-53 |
| 3 | g7575.t10 | PANTHER | PTHR22761:SF14 | CHARGED MULTIVESICULAR BODY PROTEIN 4A | 10 | 168 | 1.2E-53 |
| 1 | g7575.t10 | Pfam | PF03357 | Snf7 | 10 | 138 | 1.2E-39 |
| 8 | g7575.t10 | ProSiteProfiles | PS51179 | POU-specific (POUs) domain profile. | 159 | 172 | 8.758 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0007034 | vacuolar transport | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed