General information for g7579.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin, muscle.
Parent gene
- The parent gene g7579 is located on chr_2: 24638903..24639782 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7579 | g7579.t1 | TTS | g7579.t1 | 24637378 | 24637378 |
| chr_2 | g7579 | g7579.t1 | isoform | g7579.t1 | 24637801 | 24639782 |
| chr_2 | g7579 | g7579.t1 | exon | g7579.t1.exon1 | 24637801 | 24638891 |
| chr_2 | g7579 | g7579.t1 | cds | g7579.t1.CDS1 | 24637801 | 24638891 |
| chr_2 | g7579 | g7579.t1 | exon | g7579.t1.exon2 | 24639743 | 24639782 |
| chr_2 | g7579 | g7579.t1 | cds | g7579.t1.CDS2 | 24639743 | 24639782 |
| chr_2 | g7579 | g7579.t1 | TSS | g7579.t1 | 24639846 | 24639846 |
Sequences
>g7579.t1 Gene=g7579 Length=1131
ATGTGTGACGATGATGTTGCTGCTTTAGTCGTTGACAATGGCTCAGGTATGTGCAAAGCT
GGCTTTGCCGGTGATGATGCACCACGTGCCGTCTTCCCATCAATTGTTGGTCGCCCACGT
CATCAAGGTGTTATGGTCGGTATGGGTCAAAAGGACTCATATGTCGGTGATGAGGCTCAA
AGCAAAAGAGGTATCCTCACATTGAAATATCCAATTGAACACGGTATCATCACAAACTGG
GACGATATGGAAAAGATCTGGCATCACACATTCTACAATGAACTTCGTGTTGCACCAGAA
GAACACCCAGTCTTGCTCACAGAAGCTCCATTGAACCCAAAGGCTAACCGTGAGAAGATG
ACACAAATCATGTTCGAAACCTTCAACTCACCAGCTATGTATGTCGCCATCCAAGCCGTT
CTCTCATTGTACGCTTCAGGTCGTACCACTGGTATTGTTTTGGATTCAGGAGATGGTGTT
TCACACACAGTCCCAATTTATGAAGGTTATGCCTTGCCACATGCCATCCTCCGTCTTGAC
TTGGCTGGTCGTGACTTGACTGATTACTTGATGAAGATCTTGACCGAACGTGGTTACTCA
TTCACAACCACTGCTGAACGTGAAATTGTTCGTGATATTAAGGAAAAATTGTGCTATGTT
GCTTTGGACTTTGAACAAGAAATGGCCACAGCTGCTGCATCAACATCACTCGAGAAGTCA
TATGAATTGCCTGATGGTCAAGTTATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAA
GCATTGTTCCAACCATCATTCTTGGGTATGGAATCATGCGGTATTCACGAGACCGTCTAC
AATTCAATCATGAAATGCGACGTTGATATCCGTAAGGACTTGTATGCCAACACAGTCATG
TCAGGTGGCACAACAATGTACCCAGGTATTGCCGATCGTATGCAAAAGGAAATCACTGCC
TTGGCTCCATCAACCATCAAGATCAAGATTATTGCTCCACCAGAACGTAAATACTCTGTA
TGGATCGGAGGTTCAATCTTGGCATCACTCTCAACCTTCCAACAAATGTGGATCTCAAAG
GAAGAATACGACGAATCAGGCCCAGGCATTGTCCACAGAAAGTGCTTCTAA
>g7579.t1 Gene=g7579 Length=376
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKS
YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVM
SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
EEYDESGPGIVHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g7579.t1 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 9 | 182 | 1.02777E-19 |
| 14 | g7579.t1 | Gene3D | G3DSA:3.30.420.40 | - | 9 | 372 | 3.9E-191 |
| 13 | g7579.t1 | Gene3D | G3DSA:3.30.420.40 | - | 139 | 339 | 3.9E-191 |
| 12 | g7579.t1 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 181 | 273 | 3.9E-191 |
| 2 | g7579.t1 | PANTHER | PTHR11937:SF162 | ACTIN, INDIRECT FLIGHT MUSCLE-LIKE PROTEIN | 1 | 375 | 2.4E-261 |
| 3 | g7579.t1 | PANTHER | PTHR11937 | ACTIN | 1 | 375 | 2.4E-261 |
| 6 | g7579.t1 | PRINTS | PR00190 | Actin signature | 27 | 36 | 6.6E-58 |
| 8 | g7579.t1 | PRINTS | PR00190 | Actin signature | 50 | 61 | 6.6E-58 |
| 9 | g7579.t1 | PRINTS | PR00190 | Actin signature | 62 | 84 | 6.6E-58 |
| 5 | g7579.t1 | PRINTS | PR00190 | Actin signature | 116 | 129 | 6.6E-58 |
| 4 | g7579.t1 | PRINTS | PR00190 | Actin signature | 141 | 160 | 6.6E-58 |
| 7 | g7579.t1 | PRINTS | PR00190 | Actin signature | 237 | 253 | 6.6E-58 |
| 1 | g7579.t1 | Pfam | PF00022 | Actin | 4 | 376 | 4.3E-149 |
| 18 | g7579.t1 | ProSitePatterns | PS00406 | Actins signature 1. | 54 | 64 | - |
| 17 | g7579.t1 | ProSitePatterns | PS01132 | Actins and actin-related proteins signature. | 105 | 117 | - |
| 16 | g7579.t1 | ProSitePatterns | PS00432 | Actins signature 2. | 357 | 365 | - |
| 19 | g7579.t1 | SMART | SM00268 | actin_3 | 6 | 376 | 1.6E-239 |
| 11 | g7579.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 4 | 154 | 1.3E-66 |
| 10 | g7579.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 148 | 376 | 3.28E-99 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05692 (actin beta/gamma 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed