General information for g7579.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin, muscle.
Parent gene
- The parent gene g7579 is located on chr_2: 24638903..24639782 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7579 | g7579.t3 | isoform | g7579.t3 | 24637228 | 24639782 |
| chr_2 | g7579 | g7579.t3 | exon | g7579.t3.exon1 | 24637228 | 24638885 |
| chr_2 | g7579 | g7579.t3 | TTS | g7579.t3 | 24637378 | 24637378 |
| chr_2 | g7579 | g7579.t3 | cds | g7579.t3.CDS1 | 24637801 | 24638885 |
| chr_2 | g7579 | g7579.t3 | exon | g7579.t3.exon2 | 24639743 | 24639782 |
| chr_2 | g7579 | g7579.t3 | cds | g7579.t3.CDS2 | 24639743 | 24639782 |
| chr_2 | g7579 | g7579.t3 | TSS | g7579.t3 | 24639846 | 24639846 |
Sequences
>g7579.t3 Gene=g7579 Length=1698
ATGTGTGACGATGATGTTGCTGCTTTAGTCGTTGACAATGGTATGTGCAAAGCTGGCTTT
GCCGGTGATGATGCACCACGTGCCGTCTTCCCATCAATTGTTGGTCGCCCACGTCATCAA
GGTGTTATGGTCGGTATGGGTCAAAAGGACTCATATGTCGGTGATGAGGCTCAAAGCAAA
AGAGGTATCCTCACATTGAAATATCCAATTGAACACGGTATCATCACAAACTGGGACGAT
ATGGAAAAGATCTGGCATCACACATTCTACAATGAACTTCGTGTTGCACCAGAAGAACAC
CCAGTCTTGCTCACAGAAGCTCCATTGAACCCAAAGGCTAACCGTGAGAAGATGACACAA
ATCATGTTCGAAACCTTCAACTCACCAGCTATGTATGTCGCCATCCAAGCCGTTCTCTCA
TTGTACGCTTCAGGTCGTACCACTGGTATTGTTTTGGATTCAGGAGATGGTGTTTCACAC
ACAGTCCCAATTTATGAAGGTTATGCCTTGCCACATGCCATCCTCCGTCTTGACTTGGCT
GGTCGTGACTTGACTGATTACTTGATGAAGATCTTGACCGAACGTGGTTACTCATTCACA
ACCACTGCTGAACGTGAAATTGTTCGTGATATTAAGGAAAAATTGTGCTATGTTGCTTTG
GACTTTGAACAAGAAATGGCCACAGCTGCTGCATCAACATCACTCGAGAAGTCATATGAA
TTGCCTGATGGTCAAGTTATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAAGCATTG
TTCCAACCATCATTCTTGGGTATGGAATCATGCGGTATTCACGAGACCGTCTACAATTCA
ATCATGAAATGCGACGTTGATATCCGTAAGGACTTGTATGCCAACACAGTCATGTCAGGT
GGCACAACAATGTACCCAGGTATTGCCGATCGTATGCAAAAGGAAATCACTGCCTTGGCT
CCATCAACCATCAAGATCAAGATTATTGCTCCACCAGAACGTAAATACTCTGTATGGATC
GGAGGTTCAATCTTGGCATCACTCTCAACCTTCCAACAAATGTGGATCTCAAAGGAAGAA
TACGACGAATCAGGCCCAGGCATTGTCCACAGAAAGTGCTTCTAAATCACTCACTAAGAT
GCCACACAATCATGAAAGAAAGAAAAAATCAACTTTTTTTAATTACTATTACTTCTACAT
ATTTCTTATAATTACGTAATGCAATCTTTTTTGAATAATAAGGAAATGAAAAAGTTGCAT
GTTAACATCAAGCAAAGCAAAAGAACCAACAAACACAAAACGCTATTTAATGAATAAATT
ATTTTTAATAAGAACATTCAAAAAGCTTTCTCTGCTCACTCAAAATATCATTTTTTTAAT
TTTCATTCTGAGATGCGATGATCAAAAATCCTTTATCTATTTTCACACTATAACTGAGAA
GAAGAACAAATTACAAGCCAAGAGAAAAATTAAAAAATTTTGTGTGCAATTATTTGACCA
TCCCAATGAAATGATTTTGCGTGAATATTCTTTTTGACAAACAAAACCAAAAAAAATGAA
CATCAACAACAGTAACAACAAAACGAAGGACAAATATTATAAGATTAAGTGCAATTTTGT
CTCTATTTTGTTATGTATAAAAAATTATATTTATATAAATAAAATTCTTCTTAAATAAAT
GGCGCAAATAATTTGCTG
>g7579.t3 Gene=g7579 Length=374
MCDDDVAALVVDNGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYE
LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSG
GTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEE
YDESGPGIVHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g7579.t3 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 9 | 180 | 2.66146E-17 |
| 13 | g7579.t3 | Gene3D | G3DSA:3.30.420.40 | - | 10 | 370 | 3.8E-187 |
| 14 | g7579.t3 | Gene3D | G3DSA:3.30.420.40 | - | 137 | 337 | 3.8E-187 |
| 12 | g7579.t3 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 179 | 271 | 3.8E-187 |
| 2 | g7579.t3 | PANTHER | PTHR11937:SF162 | ACTIN, INDIRECT FLIGHT MUSCLE-LIKE PROTEIN | 1 | 373 | 1.0E-257 |
| 3 | g7579.t3 | PANTHER | PTHR11937 | ACTIN | 1 | 373 | 1.0E-257 |
| 9 | g7579.t3 | PRINTS | PR00190 | Actin signature | 25 | 34 | 6.5E-58 |
| 8 | g7579.t3 | PRINTS | PR00190 | Actin signature | 48 | 59 | 6.5E-58 |
| 7 | g7579.t3 | PRINTS | PR00190 | Actin signature | 60 | 82 | 6.5E-58 |
| 6 | g7579.t3 | PRINTS | PR00190 | Actin signature | 114 | 127 | 6.5E-58 |
| 4 | g7579.t3 | PRINTS | PR00190 | Actin signature | 139 | 158 | 6.5E-58 |
| 5 | g7579.t3 | PRINTS | PR00190 | Actin signature | 235 | 251 | 6.5E-58 |
| 1 | g7579.t3 | Pfam | PF00022 | Actin | 4 | 374 | 4.7E-146 |
| 18 | g7579.t3 | ProSitePatterns | PS00406 | Actins signature 1. | 52 | 62 | - |
| 17 | g7579.t3 | ProSitePatterns | PS01132 | Actins and actin-related proteins signature. | 103 | 115 | - |
| 16 | g7579.t3 | ProSitePatterns | PS00432 | Actins signature 2. | 355 | 363 | - |
| 19 | g7579.t3 | SMART | SM00268 | actin_3 | 6 | 374 | 4.8E-234 |
| 10 | g7579.t3 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 4 | 152 | 4.96E-62 |
| 11 | g7579.t3 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 146 | 374 | 3.2E-99 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05692 (actin beta/gamma 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed