General information for g7585.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Homeobox protein orthopedia.
Parent gene
- The parent gene g7585 is located on chr_2: 24700884..24704231 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7585 | g7585.t1 | isoform | g7585.t1 | 24700884 | 24704231 |
| chr_2 | g7585 | g7585.t1 | exon | g7585.t1.exon1 | 24700884 | 24701828 |
| chr_2 | g7585 | g7585.t1 | cds | g7585.t1.CDS1 | 24700884 | 24701828 |
| chr_2 | g7585 | g7585.t1 | exon | g7585.t1.exon2 | 24702557 | 24702614 |
| chr_2 | g7585 | g7585.t1 | cds | g7585.t1.CDS2 | 24702557 | 24702614 |
| chr_2 | g7585 | g7585.t1 | exon | g7585.t1.exon3 | 24702755 | 24702889 |
| chr_2 | g7585 | g7585.t1 | cds | g7585.t1.CDS3 | 24702755 | 24702889 |
| chr_2 | g7585 | g7585.t1 | exon | g7585.t1.exon4 | 24702971 | 24703093 |
| chr_2 | g7585 | g7585.t1 | cds | g7585.t1.CDS4 | 24702971 | 24703093 |
| chr_2 | g7585 | g7585.t1 | exon | g7585.t1.exon5 | 24703718 | 24703896 |
| chr_2 | g7585 | g7585.t1 | cds | g7585.t1.CDS5 | 24703718 | 24703896 |
| chr_2 | g7585 | g7585.t1 | exon | g7585.t1.exon6 | 24703983 | 24704039 |
| chr_2 | g7585 | g7585.t1 | cds | g7585.t1.CDS6 | 24703983 | 24704039 |
| chr_2 | g7585 | g7585.t1 | exon | g7585.t1.exon7 | 24704112 | 24704231 |
| chr_2 | g7585 | g7585.t1 | cds | g7585.t1.CDS7 | 24704112 | 24704231 |
| chr_2 | g7585 | g7585.t1 | TSS | g7585.t1 | NA | NA |
| chr_2 | g7585 | g7585.t1 | TTS | g7585.t1 | NA | NA |
Sequences
>g7585.t1 Gene=g7585 Length=1617
ATGGCTCAAAGATTGATTAAAAGTGTCAATATTGAACCTTCAGATGTTTTAAATGACAGC
GAATCAGAGTATTTTTCCATTAGATTAGTTTTGAATAAATATAACTTTGGATCAGCTGGT
ACATCATTTGAATTCTCATCAGACGACAGCAAAATAAAATTTCAAATCAATGTTAATCGA
GAAGCAACAAAAGAAGTTCAGAAAATTGAAAATCAAGAACAATTTTCTATAGTAAATAAT
GATATTGTTGAAGAAAGTTCATTTCAAGATAAACCAGTTAACAATAAGAAGCGTAAAAGA
TCGACTGCATTTTCGAATATTAATGAAAATGAAGGAAATTCAGTCGAAGAAGAACAACCA
ATTTCTCTAAGAAAGCGACAAAGATGGTGCAGAAATGTTTCAAAAGTTCAAAATTCTTTG
AAAGCTTTGAATTCAGAAATTGAAAACTCAAATGATGATAAAAATGAAGTTTTTGAAAAA
CCAATTTCAATTAAAAAAAGTTTACGACCAAAACAAATCAAAAAAACTGTAACATTTGAT
ATAAACAAGGAAATCTTAAACAAGAAGAAAAAAATGATTAAAAAAGTTAACGATAAGAAA
AATTTGGCAAAATCAGCAAAATCTGTCAAAGTTCCAATTAAATCTGACAAAATTTCTAAA
AAAGCTAAAGAAACTTCAGTCAAACATGAAGAATCTGATGAAATATTGCGATGTGAAATC
GATGGAAAAATTTTTGAAAAAAAATCGTTACTTACCAAGCATATGAAATGCCATGAATTG
AGGAAATGTTTGATATGCAACAAAATGATAAAACTGACATCATTTTCAAGTCATACTCGA
TTGACACATTCAACAAGTAAAAAATTAAAATGTAAAATTTGCGATAAGAAAATCAAAAGT
GCAAGAAGTATGGTTCATCATATGTTGACTCATGACAAAGACAGAAATAGAAGAGCAAAA
TGGAAGAAACGAAAGAAGACAACAAATGTTTTTAGAACACCAGGTTCTTTATTACCTTCA
CATGGTCTGCCTCCATTTGGCGCAAATATAACAAATATTGCTATGAGTGAAAGTTTATGC
GGTACATCGATGTTTGGCAGTGACAGATGGAGTGTTGGAGTGAATCCAATGACGGCAGGC
TTTGGTCAACTAAATCAATCATCCTCCCTAACACAATCGCTCAATGGCGCTCTTAACTCT
GGCATTAACATGTCCTCGGCCATGAGTACGAGCACCTATCAGCACTATGGACTCAACTTA
GGTGATTCTATGATGTACCATAACACAACGGGCACTAATGGAAATTGCTCGGGACCAGGA
GGCGGTGGTGGTGGCAATTCACCGAATTCTACCCCACCAAATATTAATGCATGCTCATCA
ACAACACCGCCATTATCGAGCGGACAGACAAGTCAGAGCGATGGAAATGGCAATGAATTG
AATACAAATCAGCAGCAACAACTTGTTAGCTGTCAAAATATTGCAACCGCAAATGAGGGT
GAAGATGATGTCTGGCGAGGACATAGTATAGCAGCTTTGAGAAGGCGTGCGTCTGAGCTA
AATGCAACAACATCTATTCCGCTCTATGCTCACAATTATGAACATCATGTTTATTAA
>g7585.t1 Gene=g7585 Length=538
MAQRLIKSVNIEPSDVLNDSESEYFSIRLVLNKYNFGSAGTSFEFSSDDSKIKFQINVNR
EATKEVQKIENQEQFSIVNNDIVEESSFQDKPVNNKKRKRSTAFSNINENEGNSVEEEQP
ISLRKRQRWCRNVSKVQNSLKALNSEIENSNDDKNEVFEKPISIKKSLRPKQIKKTVTFD
INKEILNKKKKMIKKVNDKKNLAKSAKSVKVPIKSDKISKKAKETSVKHEESDEILRCEI
DGKIFEKKSLLTKHMKCHELRKCLICNKMIKLTSFSSHTRLTHSTSKKLKCKICDKKIKS
ARSMVHHMLTHDKDRNRRAKWKKRKKTTNVFRTPGSLLPSHGLPPFGANITNIAMSESLC
GTSMFGSDRWSVGVNPMTAGFGQLNQSSSLTQSLNGALNSGINMSSAMSTSTYQHYGLNL
GDSMMYHNTTGTNGNCSGPGGGGGGNSPNSTPPNINACSSTTPPLSSGQTSQSDGNGNEL
NTNQQQQLVSCQNIATANEGEDDVWRGHSIAALRRRASELNATTSIPLYAHNYEHHVY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7585.t1 | Coils | Coil | Coil | 52 | 72 | - |
| 5 | g7585.t1 | Coils | Coil | Coil | 133 | 160 | - |
| 3 | g7585.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 259 | 320 | 1.5E-5 |
| 10 | g7585.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 120 | - |
| 11 | g7585.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 117 | - |
| 1 | g7585.t1 | PANTHER | PTHR46770 | HOMEOBOX PROTEIN ORTHOPEDIA | 316 | 526 | 2.4E-39 |
| 6 | g7585.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 291 | 311 | - |
| 13 | g7585.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 289 | 316 | 8.933 |
| 12 | g7585.t1 | ProSiteProfiles | PS50803 | OAR domain profile. | 508 | 521 | 9.724 |
| 8 | g7585.t1 | SMART | SM00355 | c2h2final6 | 236 | 258 | 15.0 |
| 9 | g7585.t1 | SMART | SM00355 | c2h2final6 | 261 | 283 | 74.0 |
| 7 | g7585.t1 | SMART | SM00355 | c2h2final6 | 289 | 311 | 0.015 |
| 2 | g7585.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 262 | 311 | 3.15E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K24901 (homeobox protein orthopedia)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed