General information for g7587.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable chitinase 2.
Parent gene
- The parent gene g7587 is located on chr_2: 24729658..24732150 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7587 | g7587.t1 | TTS | g7587.t1 | 24729611 | 24729611 |
| chr_2 | g7587 | g7587.t1 | isoform | g7587.t1 | 24729658 | 24732150 |
| chr_2 | g7587 | g7587.t1 | exon | g7587.t1.exon1 | 24729658 | 24731057 |
| chr_2 | g7587 | g7587.t1 | cds | g7587.t1.CDS1 | 24729658 | 24731057 |
| chr_2 | g7587 | g7587.t1 | exon | g7587.t1.exon2 | 24731425 | 24731887 |
| chr_2 | g7587 | g7587.t1 | cds | g7587.t1.CDS2 | 24731425 | 24731887 |
| chr_2 | g7587 | g7587.t1 | exon | g7587.t1.exon3 | 24731941 | 24732150 |
| chr_2 | g7587 | g7587.t1 | cds | g7587.t1.CDS3 | 24731941 | 24732150 |
| chr_2 | g7587 | g7587.t1 | TSS | g7587.t1 | 24732187 | 24732187 |
Sequences
>g7587.t1 Gene=g7587 Length=2073
ATGATTGTGTGTAAAATTTTAATTCTTTTCTTTTTCAATCAAGTTTCGCTCGCGAATGAT
TGTGGAATATCGGGAAATCCCAGTGGACTTATAGTGAATGGAAGTCAATCAAAAAGAGGA
GCTTGGCCATGGCTTGTAGTAATTTTTAATATTAAAACAAATAGATTGATGTGTGGTGGA
AGTCTTGTCTCGACTGATACTGTTATCACGGCAGCACATTGTTTACAAGATAAACGGCAA
GTGCATCCAAAACTTCCAACTGACATTGTGTTAAAACTCGGTCGCTATGATCTACGAAAA
ACTTATGAACGAAATGGAATTGATGCATTTGCTTATGAAATTTTCATTCATCCTCAGTGG
AAATTCTACACACCAGATTTCGATTCGGATATTGCAATAATTAAGTTGACTTCGCCAATT
ATTTATAATGATCTCATATTCCCAATATGTTTGTGGCAATACGAACATAAACCGATTGAA
ACAAATGGAATTATAGTTGGATATGGCAAATCAGAAAATGCGAAACATCGGCCGCATGAA
TTTCTTCCGCGTGAATTGGAAGTCACAATGCAGACAAATGAAAATTGCTTTTTAAGAAAT
CCTCGCTTTGCCGAAATATCGTCAATTAATACATTCTGTGCAGGCAAACGTGGTGGCTCT
GGTGCTTGTTCAGGTGACTCAGGTTCAGGGCTTTACATAAAAAATGGCGATCGTTGGTAT
TTGCGTGGAATTGTTTCTGCTTCATTTATTGTTGATAATCATTGTGATGTTGAAAATGAT
GCCATTTATACAGATGTCACGTGTCATCTAAATTGGATTAATGAAAAAATTTACAATTCA
ATTAATCATCGATATCAGCAACAGCAACCAATAGTAATTAATCGCAATGAATATAATAAA
GAAATTGTCTGCTTCATCGCAAACTGGGCTGTAATTCGTGGAAATGGTGGAAAATTTACT
TTTGATAAACATTTCAAGCCTGAACTTTGTACTACAGCAGTTTACCATGCGGCAGGACTA
AATGACGATGGCAAACTGGTAAGCTCAAATCCACATCTTGACTTGGAAGATAATGGCGGA
TTAAATGGTTATAAAAAATTTACATCACTAAAATATTCGCATCCACATCTTCGAGTGTTG
CTCAGTGTAGGCGGTTGGAATGTTGGTGTAATGAAGTTCTCAACATTGGCATCGAACGCG
CTAAAAAGAAAAGATTTTGCATTTCAATCGGTTGAATATTTAAGAAGTTTCGGCTTCGAT
GGTCTGAATGTCTTTTGGGATTATCCAGGAGATAAAGCTCGTGGTGGCACGAACGAGGAT
AAAAGCAATTTCGTGTTTTTGCTAAAAGACTTCTATGAAGTTTATAAACAACAAAATTTG
TACCTTAGCGTGACATTGAGAGCAGTAAAATGGGCCATCGATGTGGCTTACGATTTAAAA
GCAATTTCGAACTACGTAGATGCTATTCATATGCGAACATTTGACTATGCGGGCATTTGG
ACTAAGAAAATCGATTACAGTGCTGCACTTTATGACCATCGCAAAAATGCAAAAACGATT
GATGCAGCATTAAAAATTTATCAAAATGCAGGCGTTTCATCGCATAAATTGATTCTCGGA
ATACCATTCTATGCTCGCACATTTGCAACCGCGACGAGTGATGGAAATATTGGTGATGAG
AGTGAACGAATGGCATTTAAAGGGCCAATTTTAAAGAATAGTGAATTGTTGGGTTACAAT
GAAATTTGTCGTATGAAAAAGCAACATTCGTGGCTCTTTAAATTTGATAAAAATGCTTCA
CAAACGATCGGAAAGTTCATTAATAATGGAAAAGTGCACGTTGCTGTTTTTGACACGCCA
CGATCCGTAGCGAATAAAGTGAAATATGCGTTAGAAAACAATTTGCGAGGATTGTGGGTA
TGGTGGGTCGATACTGATGATTTTAATGGTGAATGTGATGTTGATGAAACGACTTACAAT
GATTTTGGAGTTCAAAGACCGCAATTGAATTACAATCGTGATTTTCCTTTATTAAGGACA
ATAAATGATATCATGAAATTTTATGGATATTGA
>g7587.t1 Gene=g7587 Length=690
MIVCKILILFFFNQVSLANDCGISGNPSGLIVNGSQSKRGAWPWLVVIFNIKTNRLMCGG
SLVSTDTVITAAHCLQDKRQVHPKLPTDIVLKLGRYDLRKTYERNGIDAFAYEIFIHPQW
KFYTPDFDSDIAIIKLTSPIIYNDLIFPICLWQYEHKPIETNGIIVGYGKSENAKHRPHE
FLPRELEVTMQTNENCFLRNPRFAEISSINTFCAGKRGGSGACSGDSGSGLYIKNGDRWY
LRGIVSASFIVDNHCDVENDAIYTDVTCHLNWINEKIYNSINHRYQQQQPIVINRNEYNK
EIVCFIANWAVIRGNGGKFTFDKHFKPELCTTAVYHAAGLNDDGKLVSSNPHLDLEDNGG
LNGYKKFTSLKYSHPHLRVLLSVGGWNVGVMKFSTLASNALKRKDFAFQSVEYLRSFGFD
GLNVFWDYPGDKARGGTNEDKSNFVFLLKDFYEVYKQQNLYLSVTLRAVKWAIDVAYDLK
AISNYVDAIHMRTFDYAGIWTKKIDYSAALYDHRKNAKTIDAALKIYQNAGVSSHKLILG
IPFYARTFATATSDGNIGDESERMAFKGPILKNSELLGYNEICRMKKQHSWLFKFDKNAS
QTIGKFINNGKVHVAVFDTPRSVANKVKYALENNLRGLWVWWVDTDDFNGECDVDETTYN
DFGVQRPQLNYNRDFPLLRTINDIMKFYGY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 21 | g7587.t1 | CDD | cd00190 | Tryp_SPc | 31 | 276 | 4.92923E-52 |
| 14 | g7587.t1 | Gene3D | G3DSA:2.40.10.10 | - | 24 | 279 | 6.9E-55 |
| 13 | g7587.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 302 | 653 | 1.3E-85 |
| 15 | g7587.t1 | Gene3D | G3DSA:3.10.50.10 | - | 543 | 617 | 1.3E-85 |
| 3 | g7587.t1 | PANTHER | PTHR11177:SF344 | CHITINASE 2-RELATED | 297 | 683 | 3.9E-73 |
| 4 | g7587.t1 | PANTHER | PTHR11177 | CHITINASE | 297 | 683 | 3.9E-73 |
| 7 | g7587.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 59 | 74 | 7.7E-11 |
| 6 | g7587.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 126 | 140 | 7.7E-11 |
| 5 | g7587.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 220 | 232 | 7.7E-11 |
| 1 | g7587.t1 | Pfam | PF00089 | Trypsin | 31 | 273 | 8.0E-40 |
| 2 | g7587.t1 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 302 | 646 | 2.1E-58 |
| 17 | g7587.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 18 | g7587.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 19 | g7587.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 12 | - |
| 20 | g7587.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 18 | - |
| 16 | g7587.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 690 | - |
| 25 | g7587.t1 | ProSitePatterns | PS00134 | Serine proteases, trypsin family, histidine active site. | 69 | 74 | - |
| 26 | g7587.t1 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 31 | 278 | 25.682 |
| 23 | g7587.t1 | SMART | SM00020 | trypsin_2 | 30 | 273 | 1.8E-42 |
| 24 | g7587.t1 | SMART | SM00636 | 2g34 | 300 | 646 | 5.3E-71 |
| 9 | g7587.t1 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 5 | 277 | 5.16E-63 |
| 10 | g7587.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 300 | 653 | 4.74E-67 |
| 8 | g7587.t1 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 544 | 599 | 4.35E-5 |
| 12 | g7587.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 22 | g7587.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 11 | g7587.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 18 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0008061 | chitin binding | MF |
| GO:0006508 | proteolysis | BP |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed