Gene loci information

Transcript annotation

  • This transcript has been annotated as Bifunctional purine biosynthesis protein PURH.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7609 g7609.t3 isoform g7609.t3 24911301 24913746
chr_2 g7609 g7609.t3 exon g7609.t3.exon1 24911301 24911667
chr_2 g7609 g7609.t3 exon g7609.t3.exon2 24911775 24912799
chr_2 g7609 g7609.t3 cds g7609.t3.CDS1 24911784 24912799
chr_2 g7609 g7609.t3 exon g7609.t3.exon3 24912859 24913501
chr_2 g7609 g7609.t3 cds g7609.t3.CDS2 24912859 24913501
chr_2 g7609 g7609.t3 exon g7609.t3.exon4 24913627 24913746
chr_2 g7609 g7609.t3 cds g7609.t3.CDS3 24913627 24913746
chr_2 g7609 g7609.t3 TTS g7609.t3 24914333 24914333
chr_2 g7609 g7609.t3 TSS g7609.t3 NA NA

Sequences

>g7609.t3 Gene=g7609 Length=2155
GACATAAAGAGCAAATTGTGTTCACTCGAGAGAAAGTCCGAAACAATTTTTGAAAAATCA
AACTGTTGCTTTATAAGAATTGATAAGTACATTGTTCTTATAAGAAAATTAACATGTCGA
GGAAAGACAGTAAATAAATTGTTCATATTTTTTTGAAACACCCTGTTTCGATGACAAACG
TGTTTGTTGTTTAAAAAATTCATCTCGCTTTTATCATTTTATGTTTTCATCATTTTTATT
ATTTGATTCGTTCAAATAGGATTGAAAAAAGCTATAGCTTCAATTATTTTTAATAAAATA
TTAACAAACTCTTTTCTTTGCTTAATAAATCAATTTATTTTAACCGGCGCATTGAAAACT
TTTTTTGCTGATAAAAATGGCATCTGCGAGATTAGCATTGCTTTCAGTCTCTGATAAGAC
GGGACTTGTTGATTTAGCGAAAGGTCTTCATGATCGTGGATTGAAATTGATTGCAAGCGG
AGGAACATCGAAGGCAATTAAAGATGCTGGCCTAGATTGTTTAGATGTTTCTCAAGTAAC
CGGTGCGCCTGAAATGCTTGGTGGCCGTGTTAAAACACTTCATCCAGCTGTTCATGCAGG
AATTCTTTCAAGAGAAATTGAATCTGATGTTGCTGATATGACTCGAATGAAATATGAATT
TATTCAATTTGTCGTTTGCAATCTCTATCCGTTTTCAGCAACAATTTCTAAGCAAAATGT
CACTATGGCTGATGCCATTGAAAACATTGATATTGGTGGAGTAACATTACTTCGTGCAGC
TGCTAAAAATCACGAAAGAGTAACAGTTCTTTGTGATCCATCTGATTATTCTGTAGTTCT
CAATGAATTGACACAATTTGGTGATACTAAAAAAGAAACAAGGCAATCATTAGCTTTAAA
AGCATTTACGCATACAGCTGAATATGATTCAGTTATTTCTGACTATTTAAGAAGGAACTA
TTCTTCAGGAATATCTCAAATCAATTTACGTTATGGAATGAATCCACACCAAAAACCTGC
TCAAATTTATACAACGCTCGAAAAATTGCCATTGAAAGTTTTAAATAGCGCTCCAGGTTT
TATCAACTTATGTGATGCTTTGAATGCATGGCAGTTGGTAAGAGAACTAAAAATTTCTCT
TAAATTACCAGCGGCTGCAAGTTTTAAGCACGTTTCTCCTGCTGGAGCGAGTGTAGCAAC
AAATTTAAGTAAGGAAGAAGCAGCTGTTTGTATGGTTGATGATCTTTATGATTCATTGAG
TCCACTGGCTATTGCTTATGCTCGAGCTCGAGGTGCCGATCGAATGTCTTCATTTGGAGA
TTTCATTGCATTATCTGAAAAATGCGATGTAATAACAGCAAAAATCATATCGCGTGAAGT
TTCAGATGGCATTATCGCACCGGATTATGAGCCAGAAGCATTTGAAATTTTAAAGAAAAA
GAAAGGAGGCAGCTATTGCATTTTGCAAATCGACCCTAATTATGTGCCAAATGACATTGA
GTCAAAAATTCTTTTTGGTCTTCATTTGGAACAGAAAAGAAATGACGCAGTTATTGATGA
AAAAGTTTTCCATAACATTGTTACAAAAAATAAGCAGCTTCCATCAAATGCGCTTCGTGA
TTTAATTGTCGCACAGATTTCTTTAAAATACACACAGAGTAACAGTGTATGTTATGCAAA
GGATGGTCAAGTAATTGGAATCGGTGCAGGTCAGCAATCCAGAATACATTGCACTCGTTT
AGCCGGAGATAAAGCGAATGTTTGGTGGTTACGACATCACCCACGTGTTTTATCAATGAA
ATTTAAGCAAGGTGTAAAAAGAGCAGAAATTTCAAATGCAATTGATAATTTCGTTAATGG
AACAATCGGACAAGATATGCCTCAAAAACAATTTGAATCAATGTTTGATATTGAAAACAT
TCCAAAATTATTGACATGCGAGGAAAAGAAAGAATGGATAAGCAAATTAAGTGAGGTCAG
TTTGGGTAGCGACGCATTTTTTCCCTTCCGTGATAACATAGATCGTGCTAAATCGAGCGG
TGTTTGTTTTATTGGCAGTCCAGCAGGCAGTACAAATGACCAAGCTGTAATCGACGCTTG
CAATGAGCACGGAATCATTTTAATTCACACTCCTTATCGTTTATTCCATCATTAA

>g7609.t3 Gene=g7609 Length=592
MASARLALLSVSDKTGLVDLAKGLHDRGLKLIASGGTSKAIKDAGLDCLDVSQVTGAPEM
LGGRVKTLHPAVHAGILSREIESDVADMTRMKYEFIQFVVCNLYPFSATISKQNVTMADA
IENIDIGGVTLLRAAAKNHERVTVLCDPSDYSVVLNELTQFGDTKKETRQSLALKAFTHT
AEYDSVISDYLRRNYSSGISQINLRYGMNPHQKPAQIYTTLEKLPLKVLNSAPGFINLCD
ALNAWQLVRELKISLKLPAAASFKHVSPAGASVATNLSKEEAAVCMVDDLYDSLSPLAIA
YARARGADRMSSFGDFIALSEKCDVITAKIISREVSDGIIAPDYEPEAFEILKKKKGGSY
CILQIDPNYVPNDIESKILFGLHLEQKRNDAVIDEKVFHNIVTKNKQLPSNALRDLIVAQ
ISLKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANVWWLRHHPRVLSMKFKQGV
KRAEISNAIDNFVNGTIGQDMPQKQFESMFDIENIPKLLTCEEKKEWISKLSEVSLGSDA
FFPFRDNIDRAKSSGVCFIGSPAGSTNDQAVIDACNEHGIILIHTPYRLFHH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7609.t3 CDD cd01421 IMPCH 5 191 0.00000
10 g7609.t3 Gene3D G3DSA:3.40.50.1380 - 1 195 0.00000
8 g7609.t3 Gene3D G3DSA:3.40.140.20 - 225 371 0.00000
9 g7609.t3 Gene3D G3DSA:3.40.140.20 - 375 592 0.00000
11 g7609.t3 Gene3D G3DSA:1.10.287.440 - 475 518 0.00000
5 g7609.t3 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 4 592 34.46258
3 g7609.t3 PANTHER PTHR11692 BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH 7 592 0.00000
4 g7609.t3 PANTHER PTHR11692:SF0 BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH 7 592 0.00000
12 g7609.t3 PIRSF PIRSF000414 PurH 1 592 0.00000
1 g7609.t3 Pfam PF02142 MGS-like domain 16 130 0.00000
2 g7609.t3 Pfam PF01808 AICARFT/IMPCHase bienzyme 135 459 0.00000
17 g7609.t3 ProSiteProfiles PS51855 MGS-like domain profile. 1 146 19.11800
14 g7609.t3 SMART SM00851 MGS_2a 16 130 0.00000
15 g7609.t3 SMART SM00798 aicarft_impchas 135 460 0.00000
6 g7609.t3 SUPERFAMILY SSF52335 Methylglyoxal synthase-like 5 195 0.00000
7 g7609.t3 SUPERFAMILY SSF53927 Cytidine deaminase-like 200 592 0.00000
16 g7609.t3 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5 536 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity MF
GO:0006164 purine nucleotide biosynthetic process BP
GO:0003824 catalytic activity MF
GO:0003937 IMP cyclohydrolase activity MF

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values