General information for g7609.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Bifunctional purine biosynthesis protein PURH.
Parent gene
- The parent gene g7609 is located on chr_2: 24913610..24914545 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7609 | g7609.t6 | TSS | g7609.t6 | 24911852 | 24911852 |
| chr_2 | g7609 | g7609.t6 | isoform | g7609.t6 | 24912797 | 24913493 |
| chr_2 | g7609 | g7609.t6 | exon | g7609.t6.exon1 | 24912797 | 24912799 |
| chr_2 | g7609 | g7609.t6 | exon | g7609.t6.exon2 | 24912859 | 24913493 |
| chr_2 | g7609 | g7609.t6 | cds | g7609.t6.CDS1 | 24913262 | 24913492 |
| chr_2 | g7609 | g7609.t6 | TTS | g7609.t6 | 24914333 | 24914333 |
Sequences
>g7609.t6 Gene=g7609 Length=638
CATTATCGCACCGGATTATGAGCCAGAAGCATTTGAAATTTTAAAGAAAAAGAAAGGAGG
CAGCTATTGCATTTTGCAAATCGACCCTAATTATGTGCCAAATGACATTGAGTCAAAAAT
TCTTTTTGGTCTTCATTTGGAACAGAAAAGAAATGACGCAGTTATTGATGAAAAAGTTTT
CCATAACATTGTTACAAAAAATAAGCAGCTTCCATCAAATGCGCTTCGTGATTTAATTGT
CGCACAGATTTCTTTAAAATACACACAGAGTAACAGTGTATGTTATGCAAAGGATGGTCA
AGTAATTGGAATCGGTGCAGGTCAGCAATCCAGAATACATTGCACTCGTTTAGCCGGAGA
TAAAGCGAATGTTTGGTGGTTACGACATCACCCACGTGTTTTATCAATGAAATTTAAGCA
AGGTGTAAAAAGAGCAGAAATTTCAAATGCAATTGATAATTTCGTTAATGGAACAATCGG
ACAAGATATGCCTCAAAAACAATTTGAATCAATGTTTGATATTGAAAACATTCCAAAATT
ATTGACATGCGAGGAAAAGAAAGAATGGATAAGCAAATTAAGTGAGGTCAGTTTGGGTAG
CGACGCATTTTTTCCCTTCCGTGATAACATAGATCGTG
>g7609.t6 Gene=g7609 Length=77
MKFKQGVKRAEISNAIDNFVNGTIGQDMPQKQFESMFDIENIPKLLTCEEKKEWISKLSE
VSLGSDAFFPFRDNIDR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7609.t6 | Gene3D | G3DSA:1.10.287.440 | - | 1 | 45 | 0 |
| 1 | g7609.t6 | SUPERFAMILY | SSF53927 | Cytidine deaminase-like | 1 | 76 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
