General information for g7611.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphoserine phosphatase.
Parent gene
- The parent gene g7611 is located on chr_2: 24927729..24928196 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7611 | g7611.t11 | TSS | g7611.t11 | 24926678 | 24926678 |
| chr_2 | g7611 | g7611.t11 | isoform | g7611.t11 | 24926883 | 24928196 |
| chr_2 | g7611 | g7611.t11 | exon | g7611.t11.exon1 | 24926883 | 24926890 |
| chr_2 | g7611 | g7611.t11 | cds | g7611.t11.CDS1 | 24926883 | 24926890 |
| chr_2 | g7611 | g7611.t11 | exon | g7611.t11.exon2 | 24927072 | 24927503 |
| chr_2 | g7611 | g7611.t11 | cds | g7611.t11.CDS2 | 24927072 | 24927503 |
| chr_2 | g7611 | g7611.t11 | exon | g7611.t11.exon3 | 24927702 | 24928196 |
| chr_2 | g7611 | g7611.t11 | cds | g7611.t11.CDS3 | 24927702 | 24927792 |
| chr_2 | g7611 | g7611.t11 | TTS | g7611.t11 | 24928300 | 24928300 |
Sequences
>g7611.t11 Gene=g7611 Length=935
ATGAATCGTTGGAATAAATCGATCGTCAGTCTGGTTGCAATTGCTTCACCATCCACATCG
ACAAATAGTAGTGCCCAAGTAATCATGCCTCAAATACAATCTTTAGTTCGTAATCTTACA
ACTACTGTCACAACAACCGGTTCAAAAACAACAGCTGAAAATAAAAGCAAACGCGTATTG
GAAGCTAAACGAATTATTCAATCAGCTGATATTGTTTGCTTTGATGTTGATTCAACTGTA
ATAAAAGAAGAAGGTATCGACGAATTAGCAGAATTTTGTGGTAAAGGTGAAGAGGTATCG
AATCTGACAAAGGAAGCGATGGGTGGTGCAATGACATTCCAAGAGGCTCTACGTCGAAGA
TTGGATATAATCAAACCAACACAATCGCAAATAAGACAGTTTTTACTGGAAAAGCCTAGC
ACATTGTCTCCTCGTATCAAAGAATTTATTGAGTATCTCAAGAGCCATGGTAAAAAAATT
TATTTAATCTCGGGTGGTTTTCATTCGTTGATAGATCCTGTAAGTAAATGAATTATTAAA
AATTGTTACCAAGTCGATATTTATGAACATATCAATCATTTTTTATTTTCTTTTCTTTTT
CTAAGGTGTGTCAAGAACTTGAAATTCCACTTACAAACTTGTTTGCTAACAAATTGTTAT
TTGATTTTAATGGAAATTATGCTGGATTTGATATCAATCAGCCGACATCAAGAAGCGGAG
GTAAAGGAGACGCAATCGCGCAAATAAGAATGGCTAATAGCAGTCAGCTTATTGAAAATG
ATCGAAAGACAATTGTCATGATTGGTGATGGAGCAACTGATTTAGAAAGTTCACCTCCTG
CTGATTATTTCATTGGTTATGGTGGAAATGTCATTAGAGAACCCGTACGAGAACGTGCAC
TTTATTTTGTTACAGACTTTTCTCAATTAATGTGA
>g7611.t11 Gene=g7611 Length=176
MNRWNKSIVSLVAIASPSTSTNSSAQVIMPQIQSLVRNLTTTVTTTGSKTTAENKSKRVL
EAKRIIQSADIVCFDVDSTVIKEEGIDELAEFCGKGEEVSNLTKEAMGGAMTFQEALRRR
LDIIKPTQSQIRQFLLEKPSTLSPRIKEFIEYLKSHGKKIYLISGGFHSLIDPVSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7611.t11 | Gene3D | G3DSA:3.40.50.1000 | - | 5 | 176 | 1.3E-32 |
| 2 | g7611.t11 | PANTHER | PTHR43344:SF2 | PHOSPHOSERINE PHOSPHATASE | 20 | 175 | 1.0E-43 |
| 3 | g7611.t11 | PANTHER | PTHR43344 | PHOSPHOSERINE PHOSPHATASE | 20 | 175 | 1.0E-43 |
| 9 | g7611.t11 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 25 | - |
| 10 | g7611.t11 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 11 | g7611.t11 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 16 | - |
| 12 | g7611.t11 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 25 | - |
| 8 | g7611.t11 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 26 | 176 | - |
| 4 | g7611.t11 | SUPERFAMILY | SSF56784 | HAD-like | 63 | 175 | 4.21E-29 |
| 1 | g7611.t11 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 25 | - |
| 5 | g7611.t11 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 25 | - |
| 7 | g7611.t11 | TIGRFAM | TIGR01488 | HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB | 72 | 175 | 2.1E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed