General information for g7611.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphoserine phosphatase.
Parent gene
- The parent gene g7611 is located on chr_2: 24927729..24928196 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7611 | g7611.t2 | isoform | g7611.t2 | 24925050 | 24927503 |
| chr_2 | g7611 | g7611.t2 | exon | g7611.t2.exon1 | 24925050 | 24925062 |
| chr_2 | g7611 | g7611.t2 | exon | g7611.t2.exon2 | 24925138 | 24925289 |
| chr_2 | g7611 | g7611.t2 | exon | g7611.t2.exon3 | 24927072 | 24927503 |
| chr_2 | g7611 | g7611.t2 | cds | g7611.t2.CDS1 | 24927148 | 24927501 |
| chr_2 | g7611 | g7611.t2 | TTS | g7611.t2 | 24928300 | 24928300 |
| chr_2 | g7611 | g7611.t2 | TSS | g7611.t2 | NA | NA |
Sequences
>g7611.t2 Gene=g7611 Length=597
GGTATGATTTTTATCGGTCGCTGCGCTTGCTATTTTCAAGTCATTTTCCTGAGCTTCAAC
CTTTTAGTTTTTTTGCTTTGCGTTTCCTGTCTCTCTTGGAAACAAATAAAAAGAATAAAG
TTTGTTTATTCATTCTTATCAGTGTGAATATTTTTTTTTCAAAAGTTGGAATAAATCGAT
CGTCAGTCTGGTTGCAATTGCTTCACCATCCACATCGACAAATAGTAGTGCCCAAGTAAT
CATGCCTCAAATACAATCTTTAGTTCGTAATCTTACAACTACTGTCACAACAACCGGTTC
AAAAACAACAGCTGAAAATAAAAGCAAACGCGTATTGGAAGCTAAACGAATTATTCAATC
AGCTGATATTGTTTGCTTTGATGTTGATTCAACTGTAATAAAAGAAGAAGGTATCGACGA
ATTAGCAGAATTTTGTGGTAAAGGTGAAGAGGTATCGAATCTGACAAAGGAAGCGATGGG
TGGTGCAATGACATTCCAAGAGGCTCTACGTCGAAGATTGGATATAATCAAACCAACACA
ATCGCAAATAAGACAGTTTTTACTGGAAAAGCCTAGCACATTGTCTCCTCGTATCAA
>g7611.t2 Gene=g7611 Length=118
MPQIQSLVRNLTTTVTTTGSKTTAENKSKRVLEAKRIIQSADIVCFDVDSTVIKEEGIDE
LAEFCGKGEEVSNLTKEAMGGAMTFQEALRRRLDIIKPTQSQIRQFLLEKPSTLSPRI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7611.t2 | Gene3D | G3DSA:3.40.50.1000 | - | 3 | 118 | 0 |
| 1 | g7611.t2 | PANTHER | PTHR43344:SF2 | PHOSPHOSERINE PHOSPHATASE | 15 | 116 | 0 |
| 2 | g7611.t2 | PANTHER | PTHR43344 | PHOSPHOSERINE PHOSPHATASE | 15 | 116 | 0 |
| 3 | g7611.t2 | SUPERFAMILY | SSF56784 | HAD-like | 35 | 116 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
