General information for g7611.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphoserine phosphatase.
Parent gene
- The parent gene g7611 is located on chr_2: 24927729..24928196 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7611 | g7611.t5 | TSS | g7611.t5 | 24925135 | 24925135 |
| chr_2 | g7611 | g7611.t5 | isoform | g7611.t5 | 24925138 | 24928196 |
| chr_2 | g7611 | g7611.t5 | exon | g7611.t5.exon1 | 24925138 | 24925289 |
| chr_2 | g7611 | g7611.t5 | exon | g7611.t5.exon2 | 24927072 | 24927503 |
| chr_2 | g7611 | g7611.t5 | cds | g7611.t5.CDS1 | 24927148 | 24927503 |
| chr_2 | g7611 | g7611.t5 | exon | g7611.t5.exon3 | 24927702 | 24927784 |
| chr_2 | g7611 | g7611.t5 | cds | g7611.t5.CDS2 | 24927702 | 24927784 |
| chr_2 | g7611 | g7611.t5 | exon | g7611.t5.exon4 | 24927867 | 24928196 |
| chr_2 | g7611 | g7611.t5 | cds | g7611.t5.CDS3 | 24927867 | 24927883 |
| chr_2 | g7611 | g7611.t5 | TTS | g7611.t5 | 24928300 | 24928300 |
Sequences
>g7611.t5 Gene=g7611 Length=997
TCGGTCGCTGCGCTTGCTATTTTCAAGTCATTTTCCTGAGCTTCAACCTTTTAGTTTTTT
TGCTTTGCGTTTCCTGTCTCTCTTGGAAACAAATAAAAAGAATAAAGTTTGTTTATTCAT
TCTTATCAGTGTGAATATTTTTTTTTCAAAAGTTGGAATAAATCGATCGTCAGTCTGGTT
GCAATTGCTTCACCATCCACATCGACAAATAGTAGTGCCCAAGTAATCATGCCTCAAATA
CAATCTTTAGTTCGTAATCTTACAACTACTGTCACAACAACCGGTTCAAAAACAACAGCT
GAAAATAAAAGCAAACGCGTATTGGAAGCTAAACGAATTATTCAATCAGCTGATATTGTT
TGCTTTGATGTTGATTCAACTGTAATAAAAGAAGAAGGTATCGACGAATTAGCAGAATTT
TGTGGTAAAGGTGAAGAGGTATCGAATCTGACAAAGGAAGCGATGGGTGGTGCAATGACA
TTCCAAGAGGCTCTACGTCGAAGATTGGATATAATCAAACCAACACAATCGCAAATAAGA
CAGTTTTTACTGGAAAAGCCTAGCACATTGTCTCCTCGTATCAAAGAATTTATTGAGTAT
CTCAAGAGCCATGGTAAAAAAATTTATTTAATCTCGGGTGGTTTTCATTCGTTGATAGAT
CCTGTAAGTGTGTCAAGAACTTGAAATTCCACTTACAAACTTGTTTGCTAACAAATTGTT
ATTTGATTTTAATGGAAATTATGCTGGATTTGATATCAATCAGCCGACATCAAGAAGCGG
AGGTAAAGGAGACGCAATCGCGCAAATAAGAATGGCTAATAGCAGTCAGCTTATTGAAAA
TGATCGAAAGACAATTGTCATGATTGGTGATGGAGCAACTGATTTAGAAAGTTCACCTCC
TGCTGATTATTTCATTGGTTATGGTGGAAATGTCATTAGAGAACCCGTACGAGAACGTGC
ACTTTATTTTGTTACAGACTTTTCTCAATTAATGTGA
>g7611.t5 Gene=g7611 Length=151
MPQIQSLVRNLTTTVTTTGSKTTAENKSKRVLEAKRIIQSADIVCFDVDSTVIKEEGIDE
LAEFCGKGEEVSNLTKEAMGGAMTFQEALRRRLDIIKPTQSQIRQFLLEKPSTLSPRIKE
FIEYLKSHGKKIYLISGGFHSLIDPVSVSRT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7611.t5 | Gene3D | G3DSA:3.40.50.1000 | - | 3 | 148 | 0 |
| 1 | g7611.t5 | PANTHER | PTHR43344:SF2 | PHOSPHOSERINE PHOSPHATASE | 15 | 146 | 0 |
| 2 | g7611.t5 | PANTHER | PTHR43344 | PHOSPHOSERINE PHOSPHATASE | 15 | 146 | 0 |
| 3 | g7611.t5 | SUPERFAMILY | SSF56784 | HAD-like | 35 | 146 | 0 |
| 5 | g7611.t5 | TIGRFAM | TIGR01488 | HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB | 44 | 146 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed