Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Phosphoserine phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7611 g7611.t7 TSS g7611.t7 24926678 24926678
chr_2 g7611 g7611.t7 isoform g7611.t7 24926883 24928196
chr_2 g7611 g7611.t7 exon g7611.t7.exon1 24926883 24926890
chr_2 g7611 g7611.t7 cds g7611.t7.CDS1 24926883 24926890
chr_2 g7611 g7611.t7 exon g7611.t7.exon2 24927072 24927503
chr_2 g7611 g7611.t7 cds g7611.t7.CDS2 24927072 24927503
chr_2 g7611 g7611.t7 exon g7611.t7.exon3 24927702 24927780
chr_2 g7611 g7611.t7 cds g7611.t7.CDS3 24927702 24927780
chr_2 g7611 g7611.t7 exon g7611.t7.exon4 24927877 24928196
chr_2 g7611 g7611.t7 cds g7611.t7.CDS4 24927877 24928008
chr_2 g7611 g7611.t7 TTS g7611.t7 24928300 24928300

Sequences

>g7611.t7 Gene=g7611 Length=839
ATGAATCGTTGGAATAAATCGATCGTCAGTCTGGTTGCAATTGCTTCACCATCCACATCG
ACAAATAGTAGTGCCCAAGTAATCATGCCTCAAATACAATCTTTAGTTCGTAATCTTACA
ACTACTGTCACAACAACCGGTTCAAAAACAACAGCTGAAAATAAAAGCAAACGCGTATTG
GAAGCTAAACGAATTATTCAATCAGCTGATATTGTTTGCTTTGATGTTGATTCAACTGTA
ATAAAAGAAGAAGGTATCGACGAATTAGCAGAATTTTGTGGTAAAGGTGAAGAGGTATCG
AATCTGACAAAGGAAGCGATGGGTGGTGCAATGACATTCCAAGAGGCTCTACGTCGAAGA
TTGGATATAATCAAACCAACACAATCGCAAATAAGACAGTTTTTACTGGAAAAGCCTAGC
ACATTGTCTCCTCGTATCAAAGAATTTATTGAGTATCTCAAGAGCCATGGTAAAAAAATT
TATTTAATCTCGGGTGGTTTTCATTCGTTGATAGATCCTAACTTGAAATTCCACTTACAA
ACTTGTTTGCTAACAAATTGTTATTTGATTTTAATGGAAATTATGCTGGATTTGATATCA
ATCAGCCGACATCAAGAAGCGGAGGTAAAGGAGACGCAATCGCGCAAATAAGAATGGCTA
ATAGCAGTCAGCTTATTGAAAATGATCGAAAGACAATTGTCATGATTGGTGATGGAGCAA
CTGATTTAGAAAGTTCACCTCCTGCTGATTATTTCATTGGTTATGGTGGAAATGTCATTA
GAGAACCCGTACGAGAACGTGCACTTTATTTTGTTACAGACTTTTCTCAATTAATGTGA

>g7611.t7 Gene=g7611 Length=216
MNRWNKSIVSLVAIASPSTSTNSSAQVIMPQIQSLVRNLTTTVTTTGSKTTAENKSKRVL
EAKRIIQSADIVCFDVDSTVIKEEGIDELAEFCGKGEEVSNLTKEAMGGAMTFQEALRRR
LDIIKPTQSQIRQFLLEKPSTLSPRIKEFIEYLKSHGKKIYLISGGFHSLIDPNLKFHLQ
TCLLTNCYLILMEIMLDLISISRHQEAEVKETQSRK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g7611.t7 Gene3D G3DSA:3.40.50.1000 - 5 182 5.9E-32
2 g7611.t7 PANTHER PTHR43344:SF2 PHOSPHOSERINE PHOSPHATASE 20 173 1.1E-42
3 g7611.t7 PANTHER PTHR43344 PHOSPHOSERINE PHOSPHATASE 20 173 1.1E-42
9 g7611.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 25 -
10 g7611.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 7 -
11 g7611.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 8 16 -
12 g7611.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 25 -
8 g7611.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 26 216 -
4 g7611.t7 SUPERFAMILY SSF56784 HAD-like 63 182 1.75E-29
1 g7611.t7 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 25 -
5 g7611.t7 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 25 -
7 g7611.t7 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 72 175 6.6E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed