General information for g7619.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 40S ribosomal protein S24.
Parent gene
- The parent gene g7619 is located on chr_2: 24958239..24959058 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7619 | g7619.t1 | isoform | g7619.t1 | 24957683 | 24958702 |
| chr_2 | g7619 | g7619.t1 | exon | g7619.t1.exon1 | 24957683 | 24957747 |
| chr_2 | g7619 | g7619.t1 | cds | g7619.t1.CDS1 | 24957683 | 24957747 |
| chr_2 | g7619 | g7619.t1 | exon | g7619.t1.exon2 | 24957967 | 24957986 |
| chr_2 | g7619 | g7619.t1 | cds | g7619.t1.CDS2 | 24957967 | 24957986 |
| chr_2 | g7619 | g7619.t1 | exon | g7619.t1.exon3 | 24958377 | 24958702 |
| chr_2 | g7619 | g7619.t1 | cds | g7619.t1.CDS3 | 24958377 | 24958702 |
| chr_2 | g7619 | g7619.t1 | TSS | g7619.t1 | 24959058 | 24959058 |
| chr_2 | g7619 | g7619.t1 | TTS | g7619.t1 | NA | NA |
Sequences
>g7619.t1 Gene=g7619 Length=411
ATGGTTTGTGACGTTCTTCACCCAGGTTTAGCATCAGTCTCGAAGAAGGAAATTCGCGAG
AAATTGGCTACTATGTACAAGGTTACGCCAGATGTTGTATTCGTTTTTGGATTTAGAACT
AACTTTGGAGGCGGAAAATCATCAGGCTTCGCACTCATTTACGATACACTGGATTATGCC
AAGAAATTTGAACCAAAACACAGATTGGCTCGTCATGGACTCTATGAAGTTAAGAAGATC
ACACGCAAACAGCGCAAAGAACGCAAGAACAGAATGAAGAAAGTTCGCGGTACCAAAAAA
GCTAAAGTTGGTCAAGCAGCCAAGAAGAGTAGCATTGTGTTCAAAAATACACTCTTTCTC
GCATCAAGAATCAATATCGGAAAAATTACTCTATATTTAACTTTTTTGTGA
>g7619.t1 Gene=g7619 Length=136
MVCDVLHPGLASVSKKEIREKLATMYKVTPDVVFVFGFRTNFGGGKSSGFALIYDTLDYA
KKFEPKHRLARHGLYEVKKITRKQRKERKNRMKKVRGTKKAKVGQAAKKSSIVFKNTLFL
ASRINIGKITLYLTFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7619.t1 | Gene3D | G3DSA:3.30.70.3370 | - | 1 | 111 | 1.5E-54 |
| 2 | g7619.t1 | PANTHER | PTHR10496 | 40S RIBOSOMAL PROTEIN S24 | 1 | 107 | 3.9E-52 |
| 1 | g7619.t1 | Pfam | PF01282 | Ribosomal protein S24e | 2 | 79 | 7.6E-39 |
| 4 | g7619.t1 | ProSitePatterns | PS00529 | Ribosomal protein S24e signature. | 42 | 64 | - |
| 3 | g7619.t1 | SUPERFAMILY | SSF54189 | Ribosomal proteins S24e, L23 and L15e | 1 | 83 | 1.87E-29 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005840 | ribosome | CC |
| GO:0006412 | translation | BP |
| GO:0003735 | structural constituent of ribosome | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
