General information for g7622.t2
Yuki Yoshida
6/2/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7622 is located on chr_2: 24976580..24977338 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7622 | g7622.t2 | TSS | g7622.t2 | 24976537 | 24976537 |
| chr_2 | g7622 | g7622.t2 | isoform | g7622.t2 | 24976580 | 24977338 |
| chr_2 | g7622 | g7622.t2 | exon | g7622.t2.exon1 | 24976580 | 24976868 |
| chr_2 | g7622 | g7622.t2 | exon | g7622.t2.exon2 | 24976934 | 24977338 |
| chr_2 | g7622 | g7622.t2 | cds | g7622.t2.CDS1 | 24977033 | 24977338 |
| chr_2 | g7622 | g7622.t2 | TTS | g7622.t2 | 24977415 | 24977415 |
Sequences
>g7622.t2 Gene=g7622 Length=694
ATGGATTTTACTGACAAAGTTATTATCATCACTGGAGCTTCTTCCGGAATTGGACAAGGA
GCTGCGTTATATCTTTCAAAACTCGGCGCTAAATTAGTTTTGACAGGTCGTAATGAAAGT
AATTTGAAAGAGACAGCTAAGAATTGTGTGGGTGAAACAATTACCGTCATTGGTGATGTT
AATGATGAAGCGCATCGAAAGCAAATTATTGATGAGACTATCAGCAAATATGGCAAAATA
AATGTTCTTGTCAATAATTCAGGACGTGGATTAGCGGGCGATGCTGAGACAACTTGCTAT
TCCTCATTTGATTAAAACTGAAGGAAATATAGTAAATATCTCGTCGGTCGCAGGTCTTCG
AGCTTTTGCAAATGCTTCTGTATATTGCATGAGCAAAGCGGCAATTGATCAATTCACAAG
ATGTCTCGCTCTTGATTTGGCGCCGAAAAAAGTTAGATGTAATGCAGTAAATCCAGCAGT
TATTGTAACTAATTTTCATCGTGCAGTAGGAATGGATGAAGAGGCTTACAAAGCATTTCT
TGAACATTGTAAAACAACACATCCATTAGGTAGAGCAGGAACAGTTGATGAAACAGCTCA
TGCAATTGCATTTCTGGCAAGCGATTTGGCCACTTTTATAACTGGAACATGCTTAGCAGT
TGATGGAGGCAAAGCAGTATTATGCCCACGTTAA
>g7622.t2 Gene=g7622 Length=101
MSKAAIDQFTRCLALDLAPKKVRCNAVNPAVIVTNFHRAVGMDEEAYKAFLEHCKTTHPL
GRAGTVDETAHAIAFLASDLATFITGTCLAVDGGKAVLCPR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7622.t2 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 99 | 0 |
| 2 | g7622.t2 | PANTHER | PTHR43975 | ZGC:101858 | 1 | 101 | 0 |
| 4 | g7622.t2 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 20 | 37 | 0 |
| 3 | g7622.t2 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 59 | 79 | 0 |
| 1 | g7622.t2 | Pfam | PF13561 | Enoyl-(Acyl carrier protein) reductase | 1 | 94 | 0 |
| 5 | g7622.t2 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 95 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
## [1] "No matching GO terms"KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
