General information for g763.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative pre-rRNA 2’-O-ribose RNA methyltransferase FTSJ3.
Parent gene
- The parent gene g763 is located on chr_3: 5830328..5831711 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g763 | g763.t2 | TTS | g763.t2 | 5829077 | 5829077 |
| chr_3 | g763 | g763.t2 | isoform | g763.t2 | 5829119 | 5829864 |
| chr_3 | g763 | g763.t2 | exon | g763.t2.exon1 | 5829119 | 5829864 |
| chr_3 | g763 | g763.t2 | cds | g763.t2.CDS1 | 5829119 | 5829685 |
| chr_3 | g763 | g763.t2 | TSS | g763.t2 | NA | NA |
Sequences
>g763.t2 Gene=g763 Length=746
GAAGAGCTCGACATGCAGAAAATGGTGACAAAGACAAAGCGGAAAGTTCAACTGATGACG
ATTCAAGTGGCGGTGAAGACAATAATGAAGTATCACAATCAGACGATGAGGATTATGAAA
AAGCACCGAAAGTCAAAAAAATTAAACTTAATGAAGAAGAACTTGCACTTGGACAAACGA
TGATTACGAGTAAAAAGATGAAACGTGATCTCATTGATGGTGCTTGGAATCGTTACATGT
TCAATGATGAAAATCTTCCTGATTGGTTTGTCGAAGATGAAAAGAAGGCTATGCGTAAAG
AAATGCCAGTATCTGAAGGTTTAGTTGAAAATTACCGTAAAAACTTGCAAGAATTCAATA
CAAGGTCTCTTAAGAAAGTGATGGAAGCAAAGGCAAGAAAGAAGCGTCAGGCAAAGAGAC
AATTAGAAAAGATTAAAAAGAAAGCTGAAACAATTATGGAAAATGCTGACCATACTGGCA
ACGAAAAGATCAAATTGCTCAAGAAACTTTATAAGAAAACTGAAAAGAAGAAGGAAAATA
TTACATATGTTGTAGCAAAGAAAGCAAATGCATCAGGTAAGAAAGTGCGAAGACCGACAG
GTGTAAAAGGTCGATTTAAAGTTGTTGATCCACGTATGAAGAAGGACTTACGTGCTGAGA
AGAAATCTTTTAAAAAAGGTGGAGGTGGTGGTAAAAGTAAAGGAGCAAAAGGAAATAAGC
AAAAGCAAAAGATGTCAAAGAAATAA
>g763.t2 Gene=g763 Length=188
MITSKKMKRDLIDGAWNRYMFNDENLPDWFVEDEKKAMRKEMPVSEGLVENYRKNLQEFN
TRSLKKVMEAKARKKRQAKRQLEKIKKKAETIMENADHTGNEKIKLLKKLYKKTEKKKEN
ITYVVAKKANASGKKVRRPTGVKGRFKVVDPRMKKDLRAEKKSFKKGGGGGKSKGAKGNK
QKQKMSKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g763.t2 | Coils | Coil | Coil | 64 | 99 | - |
| 5 | g763.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 188 | - |
| 4 | g763.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 167 | - |
| 2 | g763.t2 | PANTHER | PTHR10920:SF13 | PRE-RRNA 2’-O-RIBOSE RNA METHYLTRANSFERASE FTSJ3 | 1 | 162 | 9.3E-43 |
| 3 | g763.t2 | PANTHER | PTHR10920 | RIBOSOMAL RNA METHYLTRANSFERASE | 1 | 162 | 9.3E-43 |
| 1 | g763.t2 | Pfam | PF07780 | Spb1 C-terminal domain | 1 | 163 | 4.7E-59 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008168 | methyltransferase activity | MF |
| GO:0006364 | rRNA processing | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
