Gene loci information

Transcript annotation

  • This transcript has been annotated as Isovaleryl-CoA dehydrogenase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7636 g7636.t5 TTS g7636.t5 25024224 25024224
chr_2 g7636 g7636.t5 isoform g7636.t5 25024272 25025229
chr_2 g7636 g7636.t5 exon g7636.t5.exon1 25024272 25025229
chr_2 g7636 g7636.t5 cds g7636.t5.CDS1 25024272 25025051
chr_2 g7636 g7636.t5 TSS g7636.t5 25025699 25025699

Sequences

>g7636.t5 Gene=g7636 Length=958
ATATCTTGATCATGTCATTATAAATGAGGAAATTTCACGTGCATCAGGTGCTATATCGCT
CTCATATGGTGCTCATTCAAATCTTTGTGTAAATCAAATTCATCGAAATGGTAATGAAGA
GCAAAAACTCAAATATTTGCCAAAATTATGTTCAGGCGACCATATTGGAGCGCTTGCAAT
GTCAGAATCAGGTAGTGGATCAGATGTCGTTTCAATGAAATTAAAAGCAGAAAAAGATGG
CAATCATTACATTTTAAATGGTAGCAAATTTTGGATTACAAATGGACCTGATGCTGATAT
TATTGTTGTTTATGCCAAAACAAATCAAAAAGTTTCACCACAGCATGGCATCACTGCTTT
CATTGTTGAAAAAGGATTTGAAGGATTCAGTACGGGACCAAAACTTGATAAACTTGGAAT
AAGAGGATCAAGCACAGGCGAATTAATTTTCCAGGATTGCAAAGTGCCTGTAGAAAATGT
TTTGGGACAAACAGAAAAAGGTGTTTATGTATTGATGAGTGGTTTAGATTATGAAAGAAT
GGTCTTGGCTTCTGGGCCAATCGGATTGATGCAAGCAGCTTGTGATGTTTCATTTGCATA
TGCTCATCAAAGAAAGCAATTCGGTGTAAGAATTGGTGAATTTCAATTAATTCAAGGAAA
AATGGCTGATATGTATACAACACTTAATGCATGCAGAAGCTATTTATACAATGTTGCCAA
AGCATGTGATCTTGGAAAAACAAATCCAAAAGACTGTGCTGGTGTGATTTTGTATTGCGC
AGAAAAAGCTACTCAACTTTGCTTAGATGCAATACAAATCTTAGGTGGAAATGGATACAT
AAACGATTTTCCCACCGGAAGATTCTTGAGAGATGCAAAATTATATGAGATTGGTGCTGG
AACAAGCGAAGTCCGTCGCATGCTAATTGGACGTCAAATTAACAAAGAGTACAAGTAA

>g7636.t5 Gene=g7636 Length=259
MSESGSGSDVVSMKLKAEKDGNHYILNGSKFWITNGPDADIIVVYAKTNQKVSPQHGITA
FIVEKGFEGFSTGPKLDKLGIRGSSTGELIFQDCKVPVENVLGQTEKGVYVLMSGLDYER
MVLASGPIGLMQAACDVSFAYAHQRKQFGVRIGEFQLIQGKMADMYTTLNACRSYLYNVA
KACDLGKTNPKDCAGVILYCAEKATQLCLDAIQILGGNGYINDFPTGRFLRDAKLYEIGA
GTSEVRRMLIGRQINKEYK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g7636.t5 Gene3D G3DSA:2.40.110.10 - 1 110 1.9E-42
9 g7636.t5 Gene3D G3DSA:1.20.140.10 - 111 254 1.4E-47
3 g7636.t5 PANTHER PTHR43884:SF12 ISOVALERYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED 1 259 1.6E-135
4 g7636.t5 PANTHER PTHR43884 ACYL-COA DEHYDROGENASE 1 259 1.6E-135
1 g7636.t5 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 1 94 2.4E-24
2 g7636.t5 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 107 254 3.5E-41
7 g7636.t5 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 213 232 -
5 g7636.t5 SUPERFAMILY SSF56645 Acyl-CoA dehydrogenase NM domain-like 1 119 1.44E-43
6 g7636.t5 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 107 255 2.58E-45

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0003995 acyl-CoA dehydrogenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values