General information for g7642.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Venom carboxylesterase-6.
Parent gene
- The parent gene g7642 is located on chr_2: 25044744..25047680 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7642 | g7642.t2 | isoform | g7642.t2 | 25043601 | 25047680 |
| chr_2 | g7642 | g7642.t2 | exon | g7642.t2.exon1 | 25043601 | 25043764 |
| chr_2 | g7642 | g7642.t2 | TSS | g7642.t2 | 25043602 | 25043602 |
| chr_2 | g7642 | g7642.t2 | cds | g7642.t2.CDS1 | 25043732 | 25043764 |
| chr_2 | g7642 | g7642.t2 | exon | g7642.t2.exon2 | 25046245 | 25047096 |
| chr_2 | g7642 | g7642.t2 | cds | g7642.t2.CDS2 | 25046245 | 25047096 |
| chr_2 | g7642 | g7642.t2 | exon | g7642.t2.exon3 | 25047166 | 25047310 |
| chr_2 | g7642 | g7642.t2 | cds | g7642.t2.CDS3 | 25047166 | 25047310 |
| chr_2 | g7642 | g7642.t2 | exon | g7642.t2.exon4 | 25047367 | 25047680 |
| chr_2 | g7642 | g7642.t2 | cds | g7642.t2.CDS4 | 25047367 | 25047680 |
| chr_2 | g7642 | g7642.t2 | TTS | g7642.t2 | 25047783 | 25047783 |
Sequences
>g7642.t2 Gene=g7642 Length=1475
TGTGTCTCAATATGTCTGAAAGATTTTTTTAATTAATTCAATTTCAGTGCCGCTTCTAGT
TTGAATATTTTTGTGTGAGAAAAGTGTGTGGTTGGATGAATGGCAATTCATTTTTTATAG
AATATTCTCACATGTCATATTATGTTTGTTCGGAGTTTCTAGTTGTTGCATTCCTTTATG
GTGGTGCGTTTATGTTTGGTTCAAGCAACTATTATCATCCTGAGTTCTTTATGAATCATG
GAAAAATGATTTTGGTGACATTAAATTATCGTCTAGGAATTTTAGGATTTCTTTCAACAG
AAGACAATATTTTACCTGGCAATCTTGGCTTGAAAGATCAAGTAGAAGCATTAAAATGGG
TTCAAAGAAATATCAAAGCATTTAATGGAGATGCTAATAAAGTAACAATTACAGGATACT
CTGCTGGTGCAGCGAGTGTACATTTACATTATCTCAGTCCACTTTCTAAAAACCTTTTTA
ACAACGGAATTTCTCATTCTGGTGTAGCTTTCAATCCGTGGGTTTTAGTGGAAAATTCTA
AAGAGAAAGCATACAAAGTTGCAGAATATGCTGAATGTCCATTTGATGATCACAAAGAAA
TGGTAAAATGTTTAAAAAAAAAACCAGCCAGCTCACTTGTTATGCTCGCTAAGAAATTTC
AACCATTCTTATACAATCCATTTTCACCATTTGGTGTTGTTGTTGAAAAACCACACAAAA
ATGCATTTCTAACTGACTTACCACAAAAACTTCTCAAAAACGGCAATTTTAACAAACGGC
CATGGATTGTATCAATGACTAAGGATGAAGGCAATTATCCAGCTGCAGAATTTTATGGGA
ATTTAAAAACGATGAATGAGATTGATACAAATTGGGAAAAACTAGCACCATCAATTTTAG
ATTTTGATGAATTGACTACAGATAGTGAGAAAAAAAGCGAAGTCTCAAGAATCATTAGAG
AATTTTATATGCATAAAATGCCAATATCAAGAGAAAATTATCAAGCATTTGATGATATTC
TCTCAGATCGATTGTTTAAGCATCATAGTGTAGTAGCAATTCAATTACAATCAAAGTGGT
CTTCTTCATATTATTATTACTTTAATTACAAAAGTTTAATGGGTGTTGGTGAAATCATGA
GCAAAACCAATGATAATTTAGGTATTGCACATGGTGAAGATGTTTTTTTAATTTTCAAGT
CAGGACTTAGACATCTCCCATACAGTGATGAAGAGCTCGAAATGAATAAAAAATTACTCA
ATTTTTACTACGATTTTGCAAAATCGGATACACCAAAGTTTGCAGGCTTAACGATTGAGC
AATCTACGCCAGATAATTGTAAATATTTACAAATATTCTCTAATGAGAAATTTTCAATGA
AAGAAATTGACGAGAATTTCGGTAATGTTAATTTCTGGGACAAAATGGAAAAAATGTTGC
TCCACAGTAATAAAAAACACAATGATGAATTGTAA
>g7642.t2 Gene=g7642 Length=447
MSYYVCSEFLVVAFLYGGAFMFGSSNYYHPEFFMNHGKMILVTLNYRLGILGFLSTEDNI
LPGNLGLKDQVEALKWVQRNIKAFNGDANKVTITGYSAGAASVHLHYLSPLSKNLFNNGI
SHSGVAFNPWVLVENSKEKAYKVAEYAECPFDDHKEMVKCLKKKPASSLVMLAKKFQPFL
YNPFSPFGVVVEKPHKNAFLTDLPQKLLKNGNFNKRPWIVSMTKDEGNYPAAEFYGNLKT
MNEIDTNWEKLAPSILDFDELTTDSEKKSEVSRIIREFYMHKMPISRENYQAFDDILSDR
LFKHHSVVAIQLQSKWSSSYYYYFNYKSLMGVGEIMSKTNDNLGIAHGEDVFLIFKSGLR
HLPYSDEELEMNKKLLNFYYDFAKSDTPKFAGLTIEQSTPDNCKYLQIFSNEKFSMKEID
ENFGNVNFWDKMEKMLLHSNKKHNDEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7642.t2 | Gene3D | G3DSA:3.40.50.1820 | - | 7 | 436 | 5.2E-108 |
| 2 | g7642.t2 | PANTHER | PTHR11559:SF370 | CARBOXYLIC ESTER HYDROLASE-RELATED | 11 | 443 | 5.8E-96 |
| 3 | g7642.t2 | PANTHER | PTHR11559 | CARBOXYLESTERASE | 11 | 443 | 5.8E-96 |
| 1 | g7642.t2 | Pfam | PF00135 | Carboxylesterase family | 11 | 417 | 2.5E-96 |
| 5 | g7642.t2 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 11 | 405 | 1.0E-81 |
| 4 | g7642.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
