General information for g7653.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.
Parent gene
- The parent gene g7653 is located on chr_2: 25088182..25089075 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7653 | g7653.t1 | TTS | g7653.t1 | 25088110 | 25088110 |
| chr_2 | g7653 | g7653.t1 | isoform | g7653.t1 | 25088182 | 25089075 |
| chr_2 | g7653 | g7653.t1 | exon | g7653.t1.exon1 | 25088182 | 25089075 |
| chr_2 | g7653 | g7653.t1 | cds | g7653.t1.CDS1 | 25088182 | 25089075 |
| chr_2 | g7653 | g7653.t1 | TSS | g7653.t1 | 25089189 | 25089189 |
Sequences
>g7653.t1 Gene=g7653 Length=894
ATGTCGATAATTAATTGCCACGCCCGTTGGGCATTTGATTTTATTGCGTGGAAACCGACA
CTACAAGAATTAATGGTCGCTGTCTCACTTATTCAACCAGAAGAGAAACAGAGAATCGCA
CAATTTGTATTTCAAGAGGATTTCAAGTCATCATTAGCCGGTCGATTGCTATTACGGTAT
TTTGTGCGTAGTGCCTTATGCATCGATAATCATCAATTCAAATTTGGAAGGGATGAGAGA
AATAAACCATATCTAATGGAAATTAATGGCAGTAAATCGAATTGTGATGGTGATAATAAA
ATTATTGATTGTAATGTGTCGCATCAGGGATCATTTGCTTGTCTTGCCGGTTTTTACGAC
AATAAAGCACCGTCAAATACAGAAGTTCGCCTTGGGGTTGATGTGATGAAAATCGAGTAT
GCAGGCGGACGTTCGCTTAGTGAATTCTTTCGTATAATGACTCGAAATTTTTCCGATAAT
GAGTGGAATTATATTAAATCGTTTAGTTCGAACCAGGAAAAGTTGCAAGCATTTATGAGA
AATTGGTGTCTGAAAGAAAGCTACGTTAAAAATATCGGCACGGGTATAACAATGAATCTC
CAGACATTAGACTTTCAATTTAACACGCCCGTGGTAAAAAACGGCGAAGTAATTACGGAT
ACTCAGTTAAAAGTTGATGGCAAATTATTGAACAATTTTACATTTGAAGAGTCACTACTG
AATGATGATCACTGTGTTGCTGTTTCGATTCAAAATAAGCCACCCTCTAACAAACATAAA
TCACTCAACTTCCAGATAATTAAATTTGAGGAATTAATCGGAAATGCCACGCCACTGACG
GCACCCGATGAAAAATATTGCGTGGAAATATTAAGAAAGGATACAAAGCGCTAA
>g7653.t1 Gene=g7653 Length=297
MSIINCHARWAFDFIAWKPTLQELMVAVSLIQPEEKQRIAQFVFQEDFKSSLAGRLLLRY
FVRSALCIDNHQFKFGRDERNKPYLMEINGSKSNCDGDNKIIDCNVSHQGSFACLAGFYD
NKAPSNTEVRLGVDVMKIEYAGGRSLSEFFRIMTRNFSDNEWNYIKSFSSNQEKLQAFMR
NWCLKESYVKNIGTGITMNLQTLDFQFNTPVVKNGEVITDTQLKVDGKLLNNFTFEESLL
NDDHCVAVSIQNKPPSNKHKSLNFQIIKFEELIGNATPLTAPDEKYCVEILRKDTKR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7653.t1 | Gene3D | G3DSA:3.90.470.20 | - | 9 | 285 | 0 |
| 6 | g7653.t1 | Gene3D | G3DSA:3.90.470.20 | - | 129 | 253 | 0 |
| 2 | g7653.t1 | PANTHER | PTHR12215 | PHOSPHOPANTETHEINE TRANSFERASE | 7 | 274 | 0 |
| 1 | g7653.t1 | Pfam | PF01648 | 4’-phosphopantetheinyl transferase superfamily | 131 | 224 | 0 |
| 4 | g7653.t1 | SUPERFAMILY | SSF56214 | 4’-phosphopantetheinyl transferase | 17 | 114 | 0 |
| 3 | g7653.t1 | SUPERFAMILY | SSF56214 | 4’-phosphopantetheinyl transferase | 130 | 261 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000287 | magnesium ion binding | MF |
| GO:0008897 | holo-[acyl-carrier-protein] synthase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K06133 (4’-phosphopantetheinyl transferase [EC:2.7.8.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
