General information for g7666.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable chitinase 2.
Parent gene
- The parent gene g7666 is located on chr_2: 25179816..25180578 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7666 | g7666.t3 | TTS | g7666.t3 | 25178165 | 25178165 |
| chr_2 | g7666 | g7666.t3 | isoform | g7666.t3 | 25178937 | 25180578 |
| chr_2 | g7666 | g7666.t3 | exon | g7666.t3.exon1 | 25178937 | 25180185 |
| chr_2 | g7666 | g7666.t3 | cds | g7666.t3.CDS1 | 25178939 | 25180027 |
| chr_2 | g7666 | g7666.t3 | exon | g7666.t3.exon2 | 25180361 | 25180578 |
| chr_2 | g7666 | g7666.t3 | TSS | g7666.t3 | 25180631 | 25180631 |
Sequences
>g7666.t3 Gene=g7666 Length=1467
ATGATTTTAGGAGTTTTTTTATTAGTTTCTTTTGCAATTTCAAATGCACAAGACTATTGT
GGATTATCAGGGAAATACGTTGGATTAGTTGTAAATGGAACACAAACTGAAAGAGGAACA
TGGCGTTGGTTAGTTGCAATTTATAAAATTGAAGGAAATCAATTGATTTGTGGTGGAACT
TTAGTATCAGCTGATACTGTAGTAACTGTAAGTTAAAAGACGTTATGATTTATCAGAAAA
TTATGAACGTGGAGCTATTGATGCTTATGCAAACGATATTTTTATACATCCGAATTGGAA
ATATTATAATACAGACTATGATTCAGATATAGCTGTTATAAAATTAACCACGCCTGTTAT
CTTCAATGATGTAATTATGCCAATTTGTATGTGGAGCTCATCTAGATCGAGTTCTTATCA
AACAGGTGCTGGTATTGTTGCTGGTTTTGGAAGATCAGAAAGGGGTGGAAAACATGAGAA
TATCGCACGTGAAATTGAAGTCAAAATCAAAACTAACGAAGAATGTTTTTTGAAGAAAGC
AGAACTTGCAAAAATTTCATCACTCAACACTTTTTGTGCAGGCAATGATCACGGTGGTGT
TTGTAGAGGAGACTCAGGATCAGGACTTTATATCAATCATCAAAATCGTTGGTATCTTCA
AGGAATTGTTTCATCATCATTAGTAGATAATAATGAATGTGATACTTCAAATGATGCAGT
TTATACCAATGTTGCAAAATTTATTGACTGGATAAATCAAATGATTGATTTTCGATTATC
AAATCTTCCTATTCCATCTGCTAACAATTTTGATGATTTCAGAAGAAACAGAAAAGAAAT
AATTTGTTATATTCCAAACTGGACCATGTACAGAAGTGAAAAATCCTTTTCATTAAATAA
TTTTAAGCCTGAACTTTGCACAACGGCTGTTTATATGTTTGCTGGTCTTGATGAAGATGG
CGGAATTAAAAGTATAGATCCTTGGGCTGATTTAGAAGATCAAGGTGGACTAAATGGGTT
CAAAAGATTTACATCATTGAAGAAAACTTTTCCACATCTTAGAACACTTTTATCAATTGG
TGGTTGGAATGAAGGAGTTGAAAAATATTCAAAATTTGTTTCGAATCCACTTAAAAGAAA
AGGTTTTGCTTTACAATCAGCTGAATTTCTTAGACAATATAATTTTGATGGATTAGATTT
TTATTGGGATTTTCCTGCTAATCCAGAACGTGGTGGAAGTCCAAATGATAAAGAAAATTT
TGTTTTACTTTTAAAAGATCTTAATGTAGTCTACTCAGCAGCTGGTCTTTTTCTTAGTGT
CACAATGCGAGCAGCAAAATGGATAACTGATATAGCATATAATTTAACAGCTATTGCAGA
TTATGCTGATATGATGAATATGATGAATTTTGACCATAGTGGAGTTTGGGATAAGAAGAT
TGGCTATAGTGCAGCACTTTATAAAAA
>g7666.t3 Gene=g7666 Length=363
MPICMWSSSRSSSYQTGAGIVAGFGRSERGGKHENIAREIEVKIKTNEECFLKKAELAKI
SSLNTFCAGNDHGGVCRGDSGSGLYINHQNRWYLQGIVSSSLVDNNECDTSNDAVYTNVA
KFIDWINQMIDFRLSNLPIPSANNFDDFRRNRKEIICYIPNWTMYRSEKSFSLNNFKPEL
CTTAVYMFAGLDEDGGIKSIDPWADLEDQGGLNGFKRFTSLKKTFPHLRTLLSIGGWNEG
VEKYSKFVSNPLKRKGFALQSAEFLRQYNFDGLDFYWDFPANPERGGSPNDKENFVLLLK
DLNVVYSAAGLFLSVTMRAAKWITDIAYNLTAIADYADMMNMMNFDHSGVWDKKIGYSAA
LYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7666.t3 | Gene3D | G3DSA:2.40.10.10 | - | 1 | 135 | 0.000 |
| 8 | g7666.t3 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 155 | 363 | 0.000 |
| 3 | g7666.t3 | PANTHER | PTHR11177:SF344 | CHITINASE 2-RELATED | 151 | 362 | 0.000 |
| 4 | g7666.t3 | PANTHER | PTHR11177 | CHITINASE | 151 | 362 | 0.000 |
| 1 | g7666.t3 | Pfam | PF00089 | Trypsin | 1 | 126 | 0.000 |
| 2 | g7666.t3 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 155 | 363 | 0.000 |
| 10 | g7666.t3 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 131 | 13.522 |
| 7 | g7666.t3 | SMART | SM00636 | 2g34 | 153 | 363 | 0.000 |
| 5 | g7666.t3 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 2 | 131 | 0.000 |
| 6 | g7666.t3 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 153 | 362 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0008061 | chitin binding | MF |
| GO:0006508 | proteolysis | BP |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed