Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease gd.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7666 g7666.t4 isoform g7666.t4 25179816 25180578
chr_2 g7666 g7666.t4 exon g7666.t4.exon1 25179816 25180246
chr_2 g7666 g7666.t4 cds g7666.t4.CDS1 25179818 25180246
chr_2 g7666 g7666.t4 exon g7666.t4.exon2 25180372 25180578
chr_2 g7666 g7666.t4 cds g7666.t4.CDS2 25180372 25180578
chr_2 g7666 g7666.t4 TSS g7666.t4 25180631 25180631
chr_2 g7666 g7666.t4 TTS g7666.t4 NA NA

Sequences

>g7666.t4 Gene=g7666 Length=638
ATGATTTTAGGAGTTTTTTTATTAGTTTCTTTTGCAATTTCAAATGCACAAGACTATTGT
GGATTATCAGGGAAATACGTTGGATTAGTTGTAAATGGAACACAAACTGAAAGAGGAACA
TGGCGTTGGTTAGTTGCAATTTATAAAATTGAAGGAAATCAATTGATTTGTGGTGGAACT
TTAGTATCAGCTGATACTGTAGTAACTAAATATTCCTATTTAAGTGTTAAAACACCAAGA
TCACCTAATGAAATTGTCATTAAACTAGGACGTTATGATTTATCAGAAAATTATGAACGT
GGAGCTATTGATGCTTATGCAAACGATATTTTTATACATCCGAATTGGAAATATTATAAT
ACAGACTATGATTCAGATATAGCTGTTATAAAATTAACCACGCCTGTTATCTTCAATGAT
GTAATTATGCCAATTTGTATGTGGAGCTCATCTAGATCGAGTTCTTATCAAACAGGTGCT
GGTATTGTTGCTGGTTTTGGAAGATCAGAAAGGGGTGGAAAACATGAGAATATCGCACGT
GAAATTGAAGTCAAAATCAAAACTAACGAAGAATGTTTTTTGAAGAAAGCAGAACTTGCA
AAAATTTCATCACTCAACACTTTTTGTGCAGGCAATGA

>g7666.t4 Gene=g7666 Length=212
MILGVFLLVSFAISNAQDYCGLSGKYVGLVVNGTQTERGTWRWLVAIYKIEGNQLICGGT
LVSADTVVTKYSYLSVKTPRSPNEIVIKLGRYDLSENYERGAIDAYANDIFIHPNWKYYN
TDYDSDIAVIKLTTPVIFNDVIMPICMWSSSRSSSYQTGAGIVAGFGRSERGGKHENIAR
EIEVKIKTNEECFLKKAELAKISSLNTFCAGN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g7666.t4 Gene3D G3DSA:2.40.10.10 - 24 212 6.9E-34
2 g7666.t4 PANTHER PTHR24260 - 25 211 3.2E-32
1 g7666.t4 Pfam PF00089 Trypsin 30 211 2.1E-24
7 g7666.t4 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
8 g7666.t4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 1 -
9 g7666.t4 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 2 12 -
10 g7666.t4 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 16 -
6 g7666.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 212 -
12 g7666.t4 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 30 212 15.621
11 g7666.t4 SMART SM00020 trypsin_2 29 212 8.2E-7
3 g7666.t4 SUPERFAMILY SSF50494 Trypsin-like serine proteases 9 211 2.56E-37
4 g7666.t4 SignalP_EUK SignalP-noTM SignalP-noTM 1 16 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed