General information for g7676.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Enhancer of mRNA-decapping protein 3.
Parent gene
- The parent gene g7676 is located on chr_2: 25223961..25225767 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7676 | g7676.t1 | TSS | g7676.t1 | 25223867 | 25223867 |
| chr_2 | g7676 | g7676.t1 | isoform | g7676.t1 | 25223961 | 25225767 |
| chr_2 | g7676 | g7676.t1 | exon | g7676.t1.exon1 | 25223961 | 25224024 |
| chr_2 | g7676 | g7676.t1 | cds | g7676.t1.CDS1 | 25223961 | 25224024 |
| chr_2 | g7676 | g7676.t1 | exon | g7676.t1.exon2 | 25224365 | 25225767 |
| chr_2 | g7676 | g7676.t1 | cds | g7676.t1.CDS2 | 25224365 | 25225767 |
| chr_2 | g7676 | g7676.t1 | TTS | g7676.t1 | 25224789 | 25224789 |
Sequences
>g7676.t1 Gene=g7676 Length=1467
ATGGCAGACTACATTGGAAAAGATGTATCGATTAAATTAAAAAGAAATTTGGGAATATTT
CAAGGTAAAATTCTTGAACCTTCACCCGACTTTATCACAATCACAAATGTGTTTCACAAT
GGAGTAAAAATAAAGAAAATTGATGCTGAAGTGACGATAGCTCGTGAAGAAATTGAGTCA
ATTTCTTTTATTCAACTTGTTGATCCAGTCGTTGCAAGTCAAAAATTGAGCGCAAGAAAT
ACTCCAGTTACACCAACAAAGCAAGATGATTTCAAAGATCCACAAATACCTGATGGAAGA
CGATCAGCTAAAAAGCAATCGCCACAAAATTTTACAAACAGAAAAGTAAATAATTTAGAC
AACAATCGACAACATAAAGCAACAAAACCAATTCCAATTAGGAGGAATACTCCAAATAAT
AATGGACATACATCAGCTTCAGCACCAGTACATTTAAAAGTTGATCAAATGCAAAACAAG
CGACATAACAATAAAAAAAGAAATAAAAATTTTGATCTCATGCAACCTGATGATTTCTCT
GATCAAGGCGATTTTGATTTTGAATCTAATAATGCAATGTTCGATAAGAAAAGTGTTTTT
CAAGAAATTGAGGCTAATATTTATGGTAAAAATCCTGAGAAACCAGATTTAGTGAGGCAT
ACACCTAAGACTGAAGAGAAGTACAGACATGATGAAAATGTTTTGGACTCAATGTTTATG
CAGTTTCGTAATATTCAGCTTGAATTTAAACCGAAGCAAGAATACACAACAGATGAACCT
GGTGTAGTTATTCCAAGCATTCCGCAATCATTGAGAAATCGAATACAAAATTTGGCAGCT
GATCATGGTTATACAATGGAAAGACAAAATGATTGCCTTGCCCGAGGTGCAACAGAATTG
GCTTTACAGTTACTTGGAGGAAGTCGAAGATTGTCACCAAAAAATTTACACCAATGGCCA
AGAGTTGTAATTATTTGTGATGAACCGTATAATTTTAAGCAGAGTGAAATTGGACTTATA
ACTGGAAGACAACTTGCAAGTCATGGTGTAAATGTAATGGTTCATGTTAAAACATCTACA
ACAAACTCTAAAGAGTCAAAAGAACTTGAATTGTATACTGCATCAGGCAATGATTTCACT
GGAAATGCCAGTGATTTACCACCAAGTGATCTCATTATTCTTGCCGTTTCAAATATGAAT
TTAAATAGCCAAATAGTGCGCTACATTCAAAACAACCGTGCAATGGTGATGGCCATTGAT
CCACCTGTCATGGGAGTTAATCCAGGTGAAATTTCTATCAAAAATACTGTCGTTCCAATT
CTTCCACTTGATGATATTCACAACACTTGCGGAAAATTACATCTCGTTAATTTATGCATC
TCTGATAAATTCTTTAAAGATGCTGGCATTAAATATTTTCCTGTTTTTGGTAGCAAATTT
ATGGTTCCATTGCATTTGAAGAATTAA
>g7676.t1 Gene=g7676 Length=488
MADYIGKDVSIKLKRNLGIFQGKILEPSPDFITITNVFHNGVKIKKIDAEVTIAREEIES
ISFIQLVDPVVASQKLSARNTPVTPTKQDDFKDPQIPDGRRSAKKQSPQNFTNRKVNNLD
NNRQHKATKPIPIRRNTPNNNGHTSASAPVHLKVDQMQNKRHNNKKRNKNFDLMQPDDFS
DQGDFDFESNNAMFDKKSVFQEIEANIYGKNPEKPDLVRHTPKTEEKYRHDENVLDSMFM
QFRNIQLEFKPKQEYTTDEPGVVIPSIPQSLRNRIQNLAADHGYTMERQNDCLARGATEL
ALQLLGGSRRLSPKNLHQWPRVVIICDEPYNFKQSEIGLITGRQLASHGVNVMVHVKTST
TNSKESKELELYTASGNDFTGNASDLPPSDLIILAVSNMNLNSQIVRYIQNNRAMVMAID
PPVMGVNPGEISIKNTVVPILPLDDIHNTCGKLHLVNLCISDKFFKDAGIKYFPVFGSKF
MVPLHLKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g7676.t1 | Gene3D | G3DSA:2.30.30.100 | - | 2 | 65 | 3.7E-15 |
| 9 | g7676.t1 | Gene3D | G3DSA:3.40.50.10260 | - | 234 | 486 | 7.6E-65 |
| 7 | g7676.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 151 | - |
| 8 | g7676.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 118 | - |
| 6 | g7676.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 147 | - |
| 2 | g7676.t1 | PANTHER | PTHR13612 | UNCHARACTERIZED | 1 | 487 | 7.0E-88 |
| 1 | g7676.t1 | Pfam | PF09532 | FDF domain | 182 | 235 | 5.7E-7 |
| 11 | g7676.t1 | ProSiteProfiles | PS51512 | DFDF domain profile. | 173 | 209 | 9.71 |
| 12 | g7676.t1 | ProSiteProfiles | PS51385 | YjeF N-terminal domain profile. | 271 | 466 | 10.953 |
| 5 | g7676.t1 | SMART | SM01271 | LSM14_2 | 1 | 76 | 0.0057 |
| 4 | g7676.t1 | SMART | SM01199 | FDF_2 | 179 | 286 | 4.5E-7 |
| 3 | g7676.t1 | SUPERFAMILY | SSF64153 | YjeF N-terminal domain-like | 281 | 482 | 1.03E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K12615 (enhancer of mRNA-decapping protein 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
