General information for g7682.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Y+L amino acid transporter 2.
Parent gene
- The parent gene g7682 is located on chr_2: 25238322..25240097 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7682 | g7682.t1 | TTS | g7682.t1 | 25237172 | 25237172 |
| chr_2 | g7682 | g7682.t1 | isoform | g7682.t1 | 25237395 | 25240097 |
| chr_2 | g7682 | g7682.t1 | exon | g7682.t1.exon1 | 25237395 | 25237662 |
| chr_2 | g7682 | g7682.t1 | cds | g7682.t1.CDS1 | 25237395 | 25237662 |
| chr_2 | g7682 | g7682.t1 | exon | g7682.t1.exon2 | 25237716 | 25238041 |
| chr_2 | g7682 | g7682.t1 | cds | g7682.t1.CDS2 | 25237716 | 25238041 |
| chr_2 | g7682 | g7682.t1 | exon | g7682.t1.exon3 | 25238110 | 25238233 |
| chr_2 | g7682 | g7682.t1 | cds | g7682.t1.CDS3 | 25238110 | 25238233 |
| chr_2 | g7682 | g7682.t1 | exon | g7682.t1.exon4 | 25238291 | 25238661 |
| chr_2 | g7682 | g7682.t1 | cds | g7682.t1.CDS4 | 25238291 | 25238661 |
| chr_2 | g7682 | g7682.t1 | exon | g7682.t1.exon5 | 25239102 | 25239217 |
| chr_2 | g7682 | g7682.t1 | cds | g7682.t1.CDS5 | 25239102 | 25239217 |
| chr_2 | g7682 | g7682.t1 | exon | g7682.t1.exon6 | 25239286 | 25239365 |
| chr_2 | g7682 | g7682.t1 | cds | g7682.t1.CDS6 | 25239286 | 25239365 |
| chr_2 | g7682 | g7682.t1 | exon | g7682.t1.exon7 | 25239881 | 25239926 |
| chr_2 | g7682 | g7682.t1 | cds | g7682.t1.CDS7 | 25239881 | 25239926 |
| chr_2 | g7682 | g7682.t1 | exon | g7682.t1.exon8 | 25240010 | 25240097 |
| chr_2 | g7682 | g7682.t1 | cds | g7682.t1.CDS8 | 25240010 | 25240097 |
| chr_2 | g7682 | g7682.t1 | TSS | g7682.t1 | 25240452 | 25240452 |
Sequences
>g7682.t1 Gene=g7682 Length=1419
ATGGGTGAAGATAGCAATAATAAAGTTGTACTTGAACGTAAAATTACGCTATGGAATGGT
GTGGGAATAATTGTTGGATCTATAATCGGATCGGGCATCTTTTTGTCACCAGCTGGAGTC
TATACTTATACTGAATCAGTAGGCTTCTCTCTCGTTGTCTGGTGCCTTTCAGGTGTACTC
TCAACTCTCGGAGCTCTCTGTTATGCAGAATTGGGCGTATTAATCACAAGATCGGGCGGT
GATTACGCTTATTTACTTGAGGCTTTTGGACCTCTAGTTGGTTTTCTTCGTTTGTGGATT
GCTCTTTTTATCATTCGACCAACTACTCAGGCGATTGTTGCGCTCACATTTGCAGAATAT
GCTGCGAAGCCCTTCTTTCCAAACTGTGTGATTCCACAAGATTTAATTAAGTTGCTCGGA
GCAATTTGCCTCTGTCTACTAACAGCAATCAACTGCATATCGACAAAGCTGTCAATGAAA
GTTCAAGATATTTTCACAGCTGGTAAATTAATTGCTTTAATATCGATCATTGCTATGGGA
GTTTATGGAATGATTATCAGCGACACAAACAACTTTGATGATGCTTGGTCAGGAGATTAT
GATGCAAAGAAAATTTGTTATGCTTTCATGCAGGGATTATTTGCCTTCGGAGGATGGAAT
TATTTGAATTTTGTTACTGGTGAATTACAGGATCCTTACAAAAATTTACCGCGTGCAATT
TACATTGGCATGCCAATTGTGACGATAATATACTGTCTTACAAACTTAGCTTATTTTGCG
GTATTGACTGGTGCAGAAATGAAAGCTAGCATCGCTGTGGCAGTCACATTTGGAAATAAA
ATATTTGGCTCACTCGCATGGCTGATTCCAATATTTGTTGCTTTATCAACATTTGGTGGA
GTGAATGGTGTGATTTTTACAAGTGCACGACTCTTCGCCACTGGTGCCAATGAAGGTCAT
CTTCCATCATTTTTTGCCCTTTTCCATGTCACCAAACAGACGCCAATTCCATCACTCATC
TTTTCTTGTCTCGTCTCACTTATTATGATAATGTTTGGAAATGCATTCGAGTTAGTCAAC
TATTTCAGTCAAGCACTTTGGTTATCAATTGCTGCATGCGTTGGCGGACTTATTTGGATG
CGAAAAACAAAACCAGACGCGCCAAGACCAATTAAAGTCAACATAATCATTCCATGGATT
TTTCTTATCATTTGCCTTGGTCTTGTTCTAACTCCATCATTCACTGAACCTATGAATTTG
GCTATAAATATTCTAATTACACTCAGTGGTGTTCCATTTTATTTCTTATGTGTCAAATGG
AAAAATAAACCAGCTGCATATAAGAAAGTCTCAAAGAGTGTCGAGAAATTTTGCCAAATT
TTATTCTCATCAGTATTCATTGACGAAGAATCTCATTAG
>g7682.t1 Gene=g7682 Length=472
MGEDSNNKVVLERKITLWNGVGIIVGSIIGSGIFLSPAGVYTYTESVGFSLVVWCLSGVL
STLGALCYAELGVLITRSGGDYAYLLEAFGPLVGFLRLWIALFIIRPTTQAIVALTFAEY
AAKPFFPNCVIPQDLIKLLGAICLCLLTAINCISTKLSMKVQDIFTAGKLIALISIIAMG
VYGMIISDTNNFDDAWSGDYDAKKICYAFMQGLFAFGGWNYLNFVTGELQDPYKNLPRAI
YIGMPIVTIIYCLTNLAYFAVLTGAEMKASIAVAVTFGNKIFGSLAWLIPIFVALSTFGG
VNGVIFTSARLFATGANEGHLPSFFALFHVTKQTPIPSLIFSCLVSLIMIMFGNAFELVN
YFSQALWLSIAACVGGLIWMRKTKPDAPRPIKVNIIIPWIFLIICLGLVLTPSFTEPMNL
AINILITLSGVPFYFLCVKWKNKPAAYKKVSKSVEKFCQILFSSVFIDEESH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g7682.t1 | Gene3D | G3DSA:1.20.1740.10 | - | 10 | 461 | 1.9E-88 |
| 2 | g7682.t1 | PANTHER | PTHR11785:SF527 | AMINO ACID TRANSPORTER PROTEIN JHI-21 | 3 | 468 | 1.3E-227 |
| 3 | g7682.t1 | PANTHER | PTHR11785 | AMINO ACID TRANSPORTER | 3 | 468 | 1.3E-227 |
| 42 | g7682.t1 | PIRSF | PIRSF006060 | AA_transporter | 1 | 457 | 1.1E-73 |
| 1 | g7682.t1 | Pfam | PF13520 | Amino acid permease | 15 | 422 | 1.3E-56 |
| 23 | g7682.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 14 | - |
| 35 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 15 | 35 | - |
| 28 | g7682.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 36 | 46 | - |
| 37 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 47 | 71 | - |
| 19 | g7682.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 72 | 82 | - |
| 40 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 83 | 105 | - |
| 24 | g7682.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 106 | 134 | - |
| 38 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 135 | 154 | - |
| 20 | g7682.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 155 | 165 | - |
| 36 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 166 | 187 | - |
| 25 | g7682.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 188 | 206 | - |
| 30 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 207 | 227 | - |
| 21 | g7682.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 228 | 238 | - |
| 32 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 239 | 261 | - |
| 29 | g7682.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 262 | 280 | - |
| 34 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 281 | 301 | - |
| 22 | g7682.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 302 | 335 | - |
| 41 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 336 | 355 | - |
| 27 | g7682.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 356 | 360 | - |
| 33 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 361 | 379 | - |
| 18 | g7682.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 380 | 390 | - |
| 39 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 391 | 414 | - |
| 26 | g7682.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 415 | 419 | - |
| 31 | g7682.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 420 | 438 | - |
| 17 | g7682.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 439 | 472 | - |
| 12 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
| 9 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 53 | 75 | - |
| 15 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 82 | 104 | - |
| 11 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 130 | 152 | - |
| 10 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 165 | 187 | - |
| 6 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 207 | 226 | - |
| 8 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 239 | 261 | - |
| 14 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 284 | 306 | - |
| 5 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 334 | 356 | - |
| 13 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 361 | 380 | - |
| 4 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 393 | 415 | - |
| 7 | g7682.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 420 | 438 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13780 (solute carrier family 7 (L-type amino acid transporter), member 5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
