General information for g7683.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hydroxylysine kinase.
Parent gene
- The parent gene g7683 is located on chr_2: 25242313..25243369 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7683 | g7683.t1 | TTS | g7683.t1 | 25241700 | 25241700 |
| chr_2 | g7683 | g7683.t1 | isoform | g7683.t1 | 25241861 | 25243369 |
| chr_2 | g7683 | g7683.t1 | exon | g7683.t1.exon1 | 25241861 | 25242061 |
| chr_2 | g7683 | g7683.t1 | cds | g7683.t1.CDS1 | 25241861 | 25242061 |
| chr_2 | g7683 | g7683.t1 | exon | g7683.t1.exon2 | 25242119 | 25242535 |
| chr_2 | g7683 | g7683.t1 | cds | g7683.t1.CDS2 | 25242119 | 25242535 |
| chr_2 | g7683 | g7683.t1 | exon | g7683.t1.exon3 | 25242679 | 25242866 |
| chr_2 | g7683 | g7683.t1 | cds | g7683.t1.CDS3 | 25242679 | 25242866 |
| chr_2 | g7683 | g7683.t1 | exon | g7683.t1.exon4 | 25242957 | 25243081 |
| chr_2 | g7683 | g7683.t1 | cds | g7683.t1.CDS4 | 25242957 | 25243081 |
| chr_2 | g7683 | g7683.t1 | exon | g7683.t1.exon5 | 25243146 | 25243278 |
| chr_2 | g7683 | g7683.t1 | cds | g7683.t1.CDS5 | 25243146 | 25243278 |
| chr_2 | g7683 | g7683.t1 | exon | g7683.t1.exon6 | 25243333 | 25243369 |
| chr_2 | g7683 | g7683.t1 | cds | g7683.t1.CDS6 | 25243333 | 25243369 |
| chr_2 | g7683 | g7683.t1 | TSS | g7683.t1 | 25243411 | 25243411 |
Sequences
>g7683.t1 Gene=g7683 Length=1101
ATGGAAAGCATCGACGAGAGTTCTATTTTAAAACCTGGTACAAAAATTAAGCCATTGACT
GATGAAAATGAAGCTAAAATCATTCTTTTAAAAGTCTATGGCATTAAAGTACTCGAAATT
TGTGAATTAAACTCGTATGATGATAAAAACTTTTTGATTTTCGCAGATAAAAACATTAAG
AATCCATATATTAAGAACTTTTGTGCAGATGGTTATGTGCTGAAAATTCTCAATTCTTTT
GACTCGAAGAAAATTGCATTTATTGAAGGCCAAACTTCTTTATCTCTCTATTTAAACAGT
CAAAAGTTTGTCAGCCCGCTTCAATTGCAGGATGTCGAGGGAAAATATTATTCATTTGAC
AATGAAAATATTGTGCGTCTTTATGAATTTATACCGGGAAAAATACTTTGTGATGTTCCG
CCATGTGCAAATTTATTTTATCATGCAGGAGTCTATTTAGGGAAATTGGATAGCAGTTTA
AAGAATTTCAATCATGATGGTTATAAAAATCACAAAACTTTATGGATGCTTTCATCAGTG
CCTCATCTTCAAGAGTTTGTGCATGTTGTGGATGAGTCAAAACGTGGAATGGTTGAAGAT
ATAATCCATAAATTCCAACAAAGAGTGCTCGATCATTTAGATGAATTTCCTCAACAAATC
ATTCATGGTGATTTCAATGAGCAAAATATTCTCGTCAATAAAAACCCAGCAACAGGCGAT
TATCGTGTGATTGGTTTTATTGACTTTGGAGACACGCAATATTCTTGTCTTTTATTTGAA
ATTGCTGTTGCATTGACATATATGATGCTTACAACTGGTGAAATTGAAACAGGCGGATTT
TTTCTTGCTGGCTATAAAATGACCCGAATAATTCCTGAAAAAGAAATGAATTTATTAAAA
CTGTGTGTATGTGCAAGACTTTGTCAATCTTTGGTACTTGGATTGTATACATATTCATTG
GATAAAGGCAATCAATATCTGCTTACGACACAAGCAAGTGGCTGGAGATTATTGGAAGCA
CTCTACAATCGTACCGATAGTGAAGTTTGTTCAATCTGGAATGCGGTAGCTGATGAATAT
TTGACACAAAGCTATAAATAA
>g7683.t1 Gene=g7683 Length=366
MESIDESSILKPGTKIKPLTDENEAKIILLKVYGIKVLEICELNSYDDKNFLIFADKNIK
NPYIKNFCADGYVLKILNSFDSKKIAFIEGQTSLSLYLNSQKFVSPLQLQDVEGKYYSFD
NENIVRLYEFIPGKILCDVPPCANLFYHAGVYLGKLDSSLKNFNHDGYKNHKTLWMLSSV
PHLQEFVHVVDESKRGMVEDIIHKFQQRVLDHLDEFPQQIIHGDFNEQNILVNKNPATGD
YRVIGFIDFGDTQYSCLLFEIAVALTYMMLTTGEIETGGFFLAGYKMTRIIPEKEMNLLK
LCVCARLCQSLVLGLYTYSLDKGNQYLLTTQASGWRLLEALYNRTDSEVCSIWNAVADEY
LTQSYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7683.t1 | Gene3D | G3DSA:3.90.1200.10 | - | 140 | 336 | 0 |
| 2 | g7683.t1 | PANTHER | PTHR21064 | UNCHARACTERIZED | 7 | 363 | 0 |
| 3 | g7683.t1 | PANTHER | PTHR21064:SF1 | HYDROXYLYSINE KINASE | 7 | 363 | 0 |
| 1 | g7683.t1 | Pfam | PF01636 | Phosphotransferase enzyme family | 72 | 274 | 0 |
| 4 | g7683.t1 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 23 | 346 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K18201 (hydroxylysine kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
