General information for g7683.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hydroxylysine kinase.
Parent gene
- The parent gene g7683 is located on chr_2: 25242313..25243369 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7683 | g7683.t3 | isoform | g7683.t3 | 25241050 | 25243369 |
| chr_2 | g7683 | g7683.t3 | exon | g7683.t3.exon1 | 25241050 | 25242061 |
| chr_2 | g7683 | g7683.t3 | cds | g7683.t3.CDS1 | 25241861 | 25242061 |
| chr_2 | g7683 | g7683.t3 | exon | g7683.t3.exon2 | 25242119 | 25242535 |
| chr_2 | g7683 | g7683.t3 | cds | g7683.t3.CDS2 | 25242119 | 25242535 |
| chr_2 | g7683 | g7683.t3 | exon | g7683.t3.exon3 | 25242679 | 25242866 |
| chr_2 | g7683 | g7683.t3 | cds | g7683.t3.CDS3 | 25242679 | 25242866 |
| chr_2 | g7683 | g7683.t3 | exon | g7683.t3.exon4 | 25242957 | 25243369 |
| chr_2 | g7683 | g7683.t3 | cds | g7683.t3.CDS4 | 25242957 | 25243089 |
| chr_2 | g7683 | g7683.t3 | TSS | g7683.t3 | 25243411 | 25243411 |
| chr_2 | g7683 | g7683.t3 | TTS | g7683.t3 | NA | NA |
Sequences
>g7683.t3 Gene=g7683 Length=2030
ATGGAAAGCATCGACGAGAGTTCTATTTTAAAACCTGGTATTTTTATTATTCAATATTTT
AAAACTTTTTTAGCTCAAATTATTGTTTTAGGTACAAAAATTAAGCCATTGACTGATGAA
AATGAAGCTAAAATCATTCTTTTAAAAGTCTATGGCATTAAAGTACTCGAAATTTGTGAA
TTAAACTCGTATGATGATAAAAACTTTTTGATTTTCGCAGATAAGTAAGTGCATATTTCT
ATTTATAGAAGTTTATTTTTGTTCTAATTGTGTCTTTCTCATGTTTAGAAACATTAAGAA
TCCATATATTAAGAACTTTTGTGCAGATGGTTATGTGCTGAAAATTCTCAATTCTTTTGA
CTCGAAGAAAATTGCATTTATTGAAGGCCAAACTTCTTTATCTCTCTATTTAAACAGTCA
AAAGTTTGTCAGCCCGCTTCAATTGCAGGATGTCGAGGGAAAATATTATTCATTTGACAA
TGAAAATATTGTGCGTCTTTATGAATTTATACCGGGAAAAATACTTTGTGATGTTCCGCC
ATGTGCAAATTTATTTTATCATGCAGGAGTCTATTTAGGGAAATTGGATAGCAGTTTAAA
GAATTTCAATCATGATGGTTATAAAAATCACAAAACTTTATGGATGCTTTCATCAGTGCC
TCATCTTCAAGAGTTTGTGCATGTTGTGGATGAGTCAAAACGTGGAATGGTTGAAGATAT
AATCCATAAATTCCAACAAAGAGTGCTCGATCATTTAGATGAATTTCCTCAACAAATCAT
TCATGGTGATTTCAATGAGCAAAATATTCTCGTCAATAAAAACCCAGCAACAGGCGATTA
TCGTGTGATTGGTTTTATTGACTTTGGAGACACGCAATATTCTTGTCTTTTATTTGAAAT
TGCTGTTGCATTGACATATATGATGCTTACAACTGGTGAAATTGAAACAGGCGGATTTTT
TCTTGCTGGCTATAAAATGACCCGAATAATTCCTGAAAAAGAAATGAATTTATTAAAACT
GTGTGTATGTGCAAGACTTTGTCAATCTTTGGTACTTGGATTGTATACATATTCATTGGA
TAAAGGCAATCAATATCTGCTTACGACACAAGCAAGTGGCTGGAGATTATTGGAAGCACT
CTACAATCGTACCGATAGTGAAGTTTGTTCAATCTGGAATGCGGTAGCTGATGAATATTT
GACACAAAGCTATAAATAATGCAGAATGTGTATCAGGATGTACAACGAATTTATTTTTCA
GTCGAAACTACCTTAGCAGTTTCTTTAAATTTATAAATAAGCAATTTGTTCGAGTAAGTG
AGTTAAAAGTTTAATGAATAAGTTATCAATAAATATAAACCACAAATGTTTTACTCGAGA
CTAAGTTGTGCTGCAATTTATTGACTTAAACAAACTTTGTTGTAAAAAATTAAATCAATA
ATTATGTGTTAAGTGGAGTAGGTTGAACTGTGTAGAAATTAATTAATTAAAATATTAATA
TTCCATAGCTTGAAACTCATGCACTCCGCTTACAATTTTTTCTCTATCTATTTAGTGATT
ATGAGTAATACATAACAATGCAAAGAGAAATGATTATCAGCAGTGCATGTGTTTTTTTTA
GAAAAAACTAAACAGAAATGACGTAAATGTAAAAGAACGAAAGTAAGAATGAGATAGTGC
GATTGTGCAATGTATATAAACACAACATTGACCTTGAGTATTTTACGATAAAAACAAACA
CTTTACTTTAACTTAGCTCGGATTTTATTGCGATCGTATAGTAAAGAGGAAAGGAAAAGA
ATAGTAGAAAAACAAGAAAGAATTTTGTTGTATGACTAATGAAAGAATTCCGAAGAAAAA
GAGTTTTTAATTGAAAAAAAAATTTAGCTATTACGTTGTCAATTCTTAATTTTTATTATT
TATTTGAGATTTTTTTATTCTATCATCATTTTGTTTATTTGTTCTAATTATTATTTACTT
TATTTAATTTTTTTTTAGTTTTCTAGAAATTTTATTAAACATGTTTATAA
>g7683.t3 Gene=g7683 Length=312
MFRNIKNPYIKNFCADGYVLKILNSFDSKKIAFIEGQTSLSLYLNSQKFVSPLQLQDVEG
KYYSFDNENIVRLYEFIPGKILCDVPPCANLFYHAGVYLGKLDSSLKNFNHDGYKNHKTL
WMLSSVPHLQEFVHVVDESKRGMVEDIIHKFQQRVLDHLDEFPQQIIHGDFNEQNILVNK
NPATGDYRVIGFIDFGDTQYSCLLFEIAVALTYMMLTTGEIETGGFFLAGYKMTRIIPEK
EMNLLKLCVCARLCQSLVLGLYTYSLDKGNQYLLTTQASGWRLLEALYNRTDSEVCSIWN
AVADEYLTQSYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7683.t3 | Gene3D | G3DSA:3.90.1200.10 | - | 86 | 282 | 0 |
| 2 | g7683.t3 | PANTHER | PTHR21064 | UNCHARACTERIZED | 5 | 309 | 0 |
| 3 | g7683.t3 | PANTHER | PTHR21064:SF1 | HYDROXYLYSINE KINASE | 5 | 309 | 0 |
| 1 | g7683.t3 | Pfam | PF01636 | Phosphotransferase enzyme family | 18 | 220 | 0 |
| 4 | g7683.t3 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 17 | 292 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
