Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Hydroxylysine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7683 g7683.t4 TTS g7683.t4 25241700 25241700
chr_2 g7683 g7683.t4 isoform g7683.t4 25241861 25243369
chr_2 g7683 g7683.t4 exon g7683.t4.exon1 25241861 25242061
chr_2 g7683 g7683.t4 cds g7683.t4.CDS1 25241861 25242061
chr_2 g7683 g7683.t4 exon g7683.t4.exon2 25242119 25242535
chr_2 g7683 g7683.t4 cds g7683.t4.CDS2 25242119 25242535
chr_2 g7683 g7683.t4 exon g7683.t4.exon3 25242679 25242866
chr_2 g7683 g7683.t4 cds g7683.t4.CDS3 25242679 25242866
chr_2 g7683 g7683.t4 exon g7683.t4.exon4 25242957 25243081
chr_2 g7683 g7683.t4 cds g7683.t4.CDS4 25242957 25243081
chr_2 g7683 g7683.t4 exon g7683.t4.exon5 25243146 25243296
chr_2 g7683 g7683.t4 cds g7683.t4.CDS5 25243146 25243296
chr_2 g7683 g7683.t4 exon g7683.t4.exon6 25243333 25243369
chr_2 g7683 g7683.t4 cds g7683.t4.CDS6 25243333 25243369
chr_2 g7683 g7683.t4 TSS g7683.t4 25243411 25243411

Sequences

>g7683.t4 Gene=g7683 Length=1119
ATGGAAAGCATCGACGAGAGTTCTATTTTAAAACCTGCTCAAATTATTGTTTTAGGTACA
AAAATTAAGCCATTGACTGATGAAAATGAAGCTAAAATCATTCTTTTAAAAGTCTATGGC
ATTAAAGTACTCGAAATTTGTGAATTAAACTCGTATGATGATAAAAACTTTTTGATTTTC
GCAGATAAAAACATTAAGAATCCATATATTAAGAACTTTTGTGCAGATGGTTATGTGCTG
AAAATTCTCAATTCTTTTGACTCGAAGAAAATTGCATTTATTGAAGGCCAAACTTCTTTA
TCTCTCTATTTAAACAGTCAAAAGTTTGTCAGCCCGCTTCAATTGCAGGATGTCGAGGGA
AAATATTATTCATTTGACAATGAAAATATTGTGCGTCTTTATGAATTTATACCGGGAAAA
ATACTTTGTGATGTTCCGCCATGTGCAAATTTATTTTATCATGCAGGAGTCTATTTAGGG
AAATTGGATAGCAGTTTAAAGAATTTCAATCATGATGGTTATAAAAATCACAAAACTTTA
TGGATGCTTTCATCAGTGCCTCATCTTCAAGAGTTTGTGCATGTTGTGGATGAGTCAAAA
CGTGGAATGGTTGAAGATATAATCCATAAATTCCAACAAAGAGTGCTCGATCATTTAGAT
GAATTTCCTCAACAAATCATTCATGGTGATTTCAATGAGCAAAATATTCTCGTCAATAAA
AACCCAGCAACAGGCGATTATCGTGTGATTGGTTTTATTGACTTTGGAGACACGCAATAT
TCTTGTCTTTTATTTGAAATTGCTGTTGCATTGACATATATGATGCTTACAACTGGTGAA
ATTGAAACAGGCGGATTTTTTCTTGCTGGCTATAAAATGACCCGAATAATTCCTGAAAAA
GAAATGAATTTATTAAAACTGTGTGTATGTGCAAGACTTTGTCAATCTTTGGTACTTGGA
TTGTATACATATTCATTGGATAAAGGCAATCAATATCTGCTTACGACACAAGCAAGTGGC
TGGAGATTATTGGAAGCACTCTACAATCGTACCGATAGTGAAGTTTGTTCAATCTGGAAT
GCGGTAGCTGATGAATATTTGACACAAAGCTATAAATAA

>g7683.t4 Gene=g7683 Length=372
MESIDESSILKPAQIIVLGTKIKPLTDENEAKIILLKVYGIKVLEICELNSYDDKNFLIF
ADKNIKNPYIKNFCADGYVLKILNSFDSKKIAFIEGQTSLSLYLNSQKFVSPLQLQDVEG
KYYSFDNENIVRLYEFIPGKILCDVPPCANLFYHAGVYLGKLDSSLKNFNHDGYKNHKTL
WMLSSVPHLQEFVHVVDESKRGMVEDIIHKFQQRVLDHLDEFPQQIIHGDFNEQNILVNK
NPATGDYRVIGFIDFGDTQYSCLLFEIAVALTYMMLTTGEIETGGFFLAGYKMTRIIPEK
EMNLLKLCVCARLCQSLVLGLYTYSLDKGNQYLLTTQASGWRLLEALYNRTDSEVCSIWN
AVADEYLTQSYK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g7683.t4 Gene3D G3DSA:3.90.1200.10 - 146 342 0
2 g7683.t4 PANTHER PTHR21064 UNCHARACTERIZED 20 369 0
3 g7683.t4 PANTHER PTHR21064:SF1 HYDROXYLYSINE KINASE 20 369 0
1 g7683.t4 Pfam PF01636 Phosphotransferase enzyme family 78 280 0
4 g7683.t4 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 29 352 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed