General information for g7683.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hydroxylysine kinase.
Parent gene
- The parent gene g7683 is located on chr_2: 25242313..25243369 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7683 | g7683.t5 | TTS | g7683.t5 | 25241700 | 25241700 |
| chr_2 | g7683 | g7683.t5 | isoform | g7683.t5 | 25241861 | 25243369 |
| chr_2 | g7683 | g7683.t5 | exon | g7683.t5.exon1 | 25241861 | 25242061 |
| chr_2 | g7683 | g7683.t5 | cds | g7683.t5.CDS1 | 25241861 | 25242061 |
| chr_2 | g7683 | g7683.t5 | exon | g7683.t5.exon2 | 25242119 | 25242535 |
| chr_2 | g7683 | g7683.t5 | cds | g7683.t5.CDS2 | 25242119 | 25242535 |
| chr_2 | g7683 | g7683.t5 | exon | g7683.t5.exon3 | 25242679 | 25242933 |
| chr_2 | g7683 | g7683.t5 | cds | g7683.t5.CDS3 | 25242679 | 25242876 |
| chr_2 | g7683 | g7683.t5 | exon | g7683.t5.exon4 | 25243279 | 25243369 |
| chr_2 | g7683 | g7683.t5 | TSS | g7683.t5 | 25243411 | 25243411 |
Sequences
>g7683.t5 Gene=g7683 Length=964
ATGGAAAGCATCGACGAGAGTTCTATTTTAAAACCTGGTATTTTTATTATTCAATATTTT
AAAACTTTTTTAGCTCAAATTATTGTTTTAGAATTCAAAAATCGATAAGCATATAATTTT
CTCTGTCTCTTTCACTCTTTATTTACGTATGTATGCAGACAGTCAAAAGTTTGTCAGCCC
GCTTCAATTGCAGGATGTCGAGGGAAAATATTATTCATTTGACAATGAAAATATTGTGCG
TCTTTATGAATTTATACCGGGAAAAATACTTTGTGATGTTCCGCCATGTGCAAATTTATT
TTATCATGCAGGAGTCTATTTAGGGAAATTGGATAGCAGTTTAAAGAATTTCAATCATGA
TGGTTATAAAAATCACAAAACTTTATGGATGCTTTCATCAGTGCCTCATCTTCAAGAGTT
TGTGCATGTTGTGGATGAGTCAAAACGTGGAATGGTTGAAGATATAATCCATAAATTCCA
ACAAAGAGTGCTCGATCATTTAGATGAATTTCCTCAACAAATCATTCATGGTGATTTCAA
TGAGCAAAATATTCTCGTCAATAAAAACCCAGCAACAGGCGATTATCGTGTGATTGGTTT
TATTGACTTTGGAGACACGCAATATTCTTGTCTTTTATTTGAAATTGCTGTTGCATTGAC
ATATATGATGCTTACAACTGGTGAAATTGAAACAGGCGGATTTTTTCTTGCTGGCTATAA
AATGACCCGAATAATTCCTGAAAAAGAAATGAATTTATTAAAACTGTGTGTATGTGCAAG
ACTTTGTCAATCTTTGGTACTTGGATTGTATACATATTCATTGGATAAAGGCAATCAATA
TCTGCTTACGACACAAGCAAGTGGCTGGAGATTATTGGAAGCACTCTACAATCGTACCGA
TAGTGAAGTTTGTTCAATCTGGAATGCGGTAGCTGATGAATATTTGACACAAAGCTATAA
ATAA
>g7683.t5 Gene=g7683 Length=271
MYADSQKFVSPLQLQDVEGKYYSFDNENIVRLYEFIPGKILCDVPPCANLFYHAGVYLGK
LDSSLKNFNHDGYKNHKTLWMLSSVPHLQEFVHVVDESKRGMVEDIIHKFQQRVLDHLDE
FPQQIIHGDFNEQNILVNKNPATGDYRVIGFIDFGDTQYSCLLFEIAVALTYMMLTTGEI
ETGGFFLAGYKMTRIIPEKEMNLLKLCVCARLCQSLVLGLYTYSLDKGNQYLLTTQASGW
RLLEALYNRTDSEVCSIWNAVADEYLTQSYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7683.t5 | Gene3D | G3DSA:3.90.1200.10 | - | 45 | 242 | 0 |
| 2 | g7683.t5 | PANTHER | PTHR21064 | UNCHARACTERIZED | 19 | 268 | 0 |
| 3 | g7683.t5 | PANTHER | PTHR21064:SF1 | HYDROXYLYSINE KINASE | 19 | 268 | 0 |
| 1 | g7683.t5 | Pfam | PF01636 | Phosphotransferase enzyme family | 21 | 179 | 0 |
| 4 | g7683.t5 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 11 | 251 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
