Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Hydroxylysine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7683 g7683.t7 TTS g7683.t7 25241700 25241700
chr_2 g7683 g7683.t7 isoform g7683.t7 25241861 25243369
chr_2 g7683 g7683.t7 exon g7683.t7.exon1 25241861 25242061
chr_2 g7683 g7683.t7 cds g7683.t7.CDS1 25241861 25242061
chr_2 g7683 g7683.t7 exon g7683.t7.exon2 25242119 25242535
chr_2 g7683 g7683.t7 cds g7683.t7.CDS2 25242119 25242535
chr_2 g7683 g7683.t7 exon g7683.t7.exon3 25242679 25243369
chr_2 g7683 g7683.t7 cds g7683.t7.CDS3 25242679 25242876
chr_2 g7683 g7683.t7 TSS g7683.t7 25243411 25243411

Sequences

>g7683.t7 Gene=g7683 Length=1309
ATGGAAAGCATCGACGAGAGTTCTATTTTAAAACCTGGTATTTTTATTATTCAATATTTT
AAAACTTTTTTAGCTCAAATTATTGTTTTAGGTACAAAAATTAAGCCATTGACTGATGAA
AATGAAGCTAAAATCATTCTTTTAAAAGTCTATGGCATTAAAGTACTCGAAATTTGTGAA
TTAAACTCGTATGATGATAAAAACTTTTTGATTTTCGCAGATAAGTAAGTGCATATTTCT
ATTTATAGAAGTTTATTTTTGTTCTAATTGTGTCTTTCTCATGTTTAGAAACATTAAGAA
TCCATATATTAAGAACTTTTGTGCAGATGGTTATGTGCTGAAAATTCTCAATTCTTTTGA
CTCGAAGAAAATTGCATTTATTGAAGGCCAAACTTCTTTATCTCTCTATTTAAGTAAGTA
ACATACACACAGTCAGAATTCAAAAATCGATAAGCATATAATTTTCTCTGTCTCTTTCAC
TCTTTATTTACGTATGTATGCAGACAGTCAAAAGTTTGTCAGCCCGCTTCAATTGCAGGA
TGTCGAGGGAAAATATTATTCATTTGACAATGAAAATATTGTGCGTCTTTATGAATTTAT
ACCGGGAAAAATACTTTGTGATGTTCCGCCATGTGCAAATTTATTTTATCATGCAGGAGT
CTATTTAGGGAAATTGGATAGCAGTTTAAAGAATTTCAATCATGATGGTTATAAAAATCA
CAAAACTTTATGGATGCTTTCATCAGTGCCTCATCTTCAAGAGTTTGTGCATGTTGTGGA
TGAGTCAAAACGTGGAATGGTTGAAGATATAATCCATAAATTCCAACAAAGAGTGCTCGA
TCATTTAGATGAATTTCCTCAACAAATCATTCATGGTGATTTCAATGAGCAAAATATTCT
CGTCAATAAAAACCCAGCAACAGGCGATTATCGTGTGATTGGTTTTATTGACTTTGGAGA
CACGCAATATTCTTGTCTTTTATTTGAAATTGCTGTTGCATTGACATATATGATGCTTAC
AACTGGTGAAATTGAAACAGGCGGATTTTTTCTTGCTGGCTATAAAATGACCCGAATAAT
TCCTGAAAAAGAAATGAATTTATTAAAACTGTGTGTATGTGCAAGACTTTGTCAATCTTT
GGTACTTGGATTGTATACATATTCATTGGATAAAGGCAATCAATATCTGCTTACGACACA
AGCAAGTGGCTGGAGATTATTGGAAGCACTCTACAATCGTACCGATAGTGAAGTTTGTTC
AATCTGGAATGCGGTAGCTGATGAATATTTGACACAAAGCTATAAATAA

>g7683.t7 Gene=g7683 Length=271
MYADSQKFVSPLQLQDVEGKYYSFDNENIVRLYEFIPGKILCDVPPCANLFYHAGVYLGK
LDSSLKNFNHDGYKNHKTLWMLSSVPHLQEFVHVVDESKRGMVEDIIHKFQQRVLDHLDE
FPQQIIHGDFNEQNILVNKNPATGDYRVIGFIDFGDTQYSCLLFEIAVALTYMMLTTGEI
ETGGFFLAGYKMTRIIPEKEMNLLKLCVCARLCQSLVLGLYTYSLDKGNQYLLTTQASGW
RLLEALYNRTDSEVCSIWNAVADEYLTQSYK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g7683.t7 Gene3D G3DSA:3.90.1200.10 - 45 242 0
2 g7683.t7 PANTHER PTHR21064 UNCHARACTERIZED 19 268 0
3 g7683.t7 PANTHER PTHR21064:SF1 HYDROXYLYSINE KINASE 19 268 0
1 g7683.t7 Pfam PF01636 Phosphotransferase enzyme family 21 179 0
4 g7683.t7 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 11 251 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed