General information for g7683.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hydroxylysine kinase.
Parent gene
- The parent gene g7683 is located on chr_2: 25242313..25243369 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7683 | g7683.t9 | TTS | g7683.t9 | 25241700 | 25241700 |
| chr_2 | g7683 | g7683.t9 | isoform | g7683.t9 | 25242313 | 25243369 |
| chr_2 | g7683 | g7683.t9 | exon | g7683.t9.exon1 | 25242313 | 25242535 |
| chr_2 | g7683 | g7683.t9 | cds | g7683.t9.CDS1 | 25242314 | 25242535 |
| chr_2 | g7683 | g7683.t9 | exon | g7683.t9.exon2 | 25242679 | 25242866 |
| chr_2 | g7683 | g7683.t9 | cds | g7683.t9.CDS2 | 25242679 | 25242866 |
| chr_2 | g7683 | g7683.t9 | exon | g7683.t9.exon3 | 25242957 | 25243081 |
| chr_2 | g7683 | g7683.t9 | cds | g7683.t9.CDS3 | 25242957 | 25243081 |
| chr_2 | g7683 | g7683.t9 | exon | g7683.t9.exon4 | 25243146 | 25243369 |
| chr_2 | g7683 | g7683.t9 | cds | g7683.t9.CDS4 | 25243146 | 25243369 |
| chr_2 | g7683 | g7683.t9 | TSS | g7683.t9 | 25243411 | 25243411 |
Sequences
>g7683.t9 Gene=g7683 Length=760
ATGGAAAGCATCGACGAGAGTTCTATTTTAAAACCTGGTATTTTTATTATTCAATATTTT
AAAACTTTTTTAGCTCAAATTATTGTTTTAGGTACAAAAATTAAGCCATTGACTGATGAA
AATGAAGCTAAAATCATTCTTTTAAAAGTCTATGGCATTAAAGTACTCGAAATTTGTGAA
TTAAACTCGTATGATGATAAAAACTTTTTGATTTTCGCAGATAAAAACATTAAGAATCCA
TATATTAAGAACTTTTGTGCAGATGGTTATGTGCTGAAAATTCTCAATTCTTTTGACTCG
AAGAAAATTGCATTTATTGAAGGCCAAACTTCTTTATCTCTCTATTTAAACAGTCAAAAG
TTTGTCAGCCCGCTTCAATTGCAGGATGTCGAGGGAAAATATTATTCATTTGACAATGAA
AATATTGTGCGTCTTTATGAATTTATACCGGGAAAAATACTTTGTGATGTTCCGCCATGT
GCAAATTTATTTTATCATGCAGGAGTCTATTTAGGGAAATTGGATAGCAGTTTAAAGAAT
TTCAATCATGATGGTTATAAAAATCACAAAACTTTATGGATGCTTTCATCAGTGCCTCAT
CTTCAAGAGTTTGTGCATGTTGTGGATGAGTCAAAACGTGGAATGGTTGAAGATATAATC
CATAAATTCCAACAAAGAGTGCTCGATCATTTAGATGAATTTCCTCAACAAATCATTCAT
GGTGATTTCAATGAGCAAAATATTCTCGTCAATAAAAACC
>g7683.t9 Gene=g7683 Length=253
MESIDESSILKPGIFIIQYFKTFLAQIIVLGTKIKPLTDENEAKIILLKVYGIKVLEICE
LNSYDDKNFLIFADKNIKNPYIKNFCADGYVLKILNSFDSKKIAFIEGQTSLSLYLNSQK
FVSPLQLQDVEGKYYSFDNENIVRLYEFIPGKILCDVPPCANLFYHAGVYLGKLDSSLKN
FNHDGYKNHKTLWMLSSVPHLQEFVHVVDESKRGMVEDIIHKFQQRVLDHLDEFPQQIIH
GDFNEQNILVNKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7683.t9 | Gene3D | G3DSA:3.90.1200.10 | - | 158 | 253 | 5.1e-06 |
| 2 | g7683.t9 | PANTHER | PTHR21064 | UNCHARACTERIZED | 32 | 252 | 0.0e+00 |
| 3 | g7683.t9 | PANTHER | PTHR21064:SF1 | HYDROXYLYSINE KINASE | 32 | 252 | 0.0e+00 |
| 1 | g7683.t9 | Pfam | PF01636 | Phosphotransferase enzyme family | 90 | 251 | 0.0e+00 |
| 4 | g7683.t9 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 40 | 251 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed