General information for g7692.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adenosine deaminase 2.
Parent gene
- The parent gene g7692 is located on chr_2: 25291064..25293025 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7692 | g7692.t2 | isoform | g7692.t2 | 25291064 | 25292278 |
| chr_2 | g7692 | g7692.t2 | exon | g7692.t2.exon1 | 25291064 | 25291313 |
| chr_2 | g7692 | g7692.t2 | exon | g7692.t2.exon2 | 25291378 | 25291605 |
| chr_2 | g7692 | g7692.t2 | cds | g7692.t2.CDS1 | 25291565 | 25291605 |
| chr_2 | g7692 | g7692.t2 | exon | g7692.t2.exon3 | 25291693 | 25291752 |
| chr_2 | g7692 | g7692.t2 | cds | g7692.t2.CDS2 | 25291693 | 25291752 |
| chr_2 | g7692 | g7692.t2 | exon | g7692.t2.exon4 | 25291819 | 25292056 |
| chr_2 | g7692 | g7692.t2 | cds | g7692.t2.CDS3 | 25291819 | 25292056 |
| chr_2 | g7692 | g7692.t2 | exon | g7692.t2.exon5 | 25292113 | 25292278 |
| chr_2 | g7692 | g7692.t2 | cds | g7692.t2.CDS4 | 25292113 | 25292256 |
| chr_2 | g7692 | g7692.t2 | TSS | g7692.t2 | NA | NA |
| chr_2 | g7692 | g7692.t2 | TTS | g7692.t2 | NA | NA |
Sequences
>g7692.t2 Gene=g7692 Length=942
AGTATGCTGATATTAATCAAGCATGGAACAAATTTATGGACATGTTTGGTGTTGTAGGCC
AATTGTTACTTATACTGAAGCATGGCGTGATTATTACAGACAAACACTTCAAGAGCTCTA
TGATGATAATGTGCAATATTTAGAATTTAGAGGTTTACTGCCAGAGCTTTATGATCTTGA
TGGAAAAAAATATGGACCAATTGAATGTGCTCAAATTTATGTTGATGTATTAAAAGATTT
TAAACAATCGCATCCAGATTTTGTTGGATCAAAATTTATTTTTGCTCCACTTCGTGGTGT
TGATGATGAAATATTCGACAGCTACTTACCAATTTTACAAAAGCTTATGAATAGATTCCC
TGAATTCATTGCCGGATTTGATTTAGTTGGACAAGAAGATAAAGGACGACCACTTATAGA
ATATGCAGAGAGATTCCTCAAGTATCCAAGTGACATTAAATTTTTTTTTGAATTATTCTT
TTATAGTTTGATGCAATCCTATTAGGAACAAAAAGAATCGGTCATGGCTATTCACTAGTA
AAGTATCCTCACCTTTTGAAAATTGTTAAAGAGAAAAAAATTGCCATAGAGATAAATCCA
ATTTCTAATCAAGTATTGAGACTCGTGGACGACATTCGAAATCATCCTGCTTCGATTCTC
CTAACAGATGATTATCCGATTGTCATCTCAAGTGACGATCCTTCTTTCTGGGGCGCAAAG
CCATTGAGTCATGATTTTTATTACGCTTTCTTGGGAATGGCATCAGCACGACAAGACTTA
AGAGCCATCAAGCGACTGATATTGAACTCTTTCGATTATAGCTCCTTGAATGACATGGAA
AAAATACATGCAAAGAAAATATGGAAAGACAAATGGAATACTTTTATAAAAGAATACCTG
CATGAACGTTCTTTAAAAACTGTCATTGAAGTTGTGAATTAA
>g7692.t2 Gene=g7692 Length=160
MEQIYGHVWCCRPIVTYTEAWRDYYRQTLQELYDDNVQYLEFRGLLPELYDLDGKKYGPI
ECAQIYVDVLKDFKQSHPDFVGSKFIFAPLRGVDDEIFDSYLPILQKLMNRFPEFIAGFD
LVGQEDKGRPLIEYAERFLKYPSDIKFFFELFFYSLMQSY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7692.t2 | Coils | Coil | Coil | 157 | 160 | - |
| 4 | g7692.t2 | Gene3D | G3DSA:3.20.20.140 | - | 5 | 151 | 4.2E-39 |
| 1 | g7692.t2 | PANTHER | PTHR11409 | ADENOSINE DEAMINASE | 11 | 149 | 3.3E-39 |
| 2 | g7692.t2 | PANTHER | PTHR11409:SF39 | ADENOSINE DEAMINASE 2 | 11 | 149 | 3.3E-39 |
| 3 | g7692.t2 | SUPERFAMILY | SSF51556 | Metallo-dependent hydrolases | 14 | 142 | 2.21E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
